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The map label for this gene is oppA fragment 5

Identifier: 109946857

GI number: 109946857

Start: 200848

End: 201120

Strand: Direct

Name: oppA fragment 5

Synonym: Hac_0237

Alternate gene names: NA

Gene position: 200848-201120 (Clockwise)

Preceding gene: 109946856

Following gene: 109946858

Centisome position: 12.93

GC content: 40.29

Gene sequence:

>273_bases
ATGAAAGTCCAAAGAGTGGATTTAAGCCAGTATGTCAATAGGGTAAAAAGCTATGATTTTGACATGATAGTGGGGGTGAT
GGGCCAGTCGTCTTTCCTAGGCAATGAACAACGCTTTTATTTTGGCTCTTTGAGTGCAAAAGAAAAAGGCACAAGGAATT
ATGCGGACGTTTCTAGTAAGGCGGTAGGTGATTTGATTGAAAAAATCATTAACACTAAAGACTACAAGGAACAATTAGCC
ACGATCCAAGCGATGGATAGGGTGCTATTGTAG

Upstream 100 bases:

>100_bases
GCTTCTAAAAAGCGTGGGCTTTTCTTAGCTTTTAAATAGCCCAGCATTTGAAAGATTAGCTCTGGCTTTCGCTAAAAACT
TGAGGGTGTTAGGGATTGAA

Downstream 100 bases:

>100_bases
GGGTTTTATGCGGTGCCACATTTTTATTTGCCCAATTACAAGATCGCAACATATAATTATGTCGGCATGCTTGAAATAAT
CCCTAGCTATGAATTTTCGC

Product: peptide ABC transporter system,periplasmic component fragment 5

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 90; Mature: 90

Protein sequence:

>90_residues
MKVQRVDLSQYVNRVKSYDFDMIVGVMGQSSFLGNEQRFYFGSLSAKEKGTRNYADVSSKAVGDLIEKIINTKDYKEQLA
TIQAMDRVLL

Sequences:

>Translated_90_residues
MKVQRVDLSQYVNRVKSYDFDMIVGVMGQSSFLGNEQRFYFGSLSAKEKGTRNYADVSSKAVGDLIEKIINTKDYKEQLA
TIQAMDRVLL
>Mature_90_residues
MKVQRVDLSQYVNRVKSYDFDMIVGVMGQSSFLGNEQRFYFGSLSAKEKGTRNYADVSSKAVGDLIEKIINTKDYKEQLA
TIQAMDRVLL

Specific function: Possible binding-protein with either a transport or enzymatic activity [H]

COG id: COG4166

COG function: function code E; ABC-type oligopeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 10249; Mature: 10249

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVQRVDLSQYVNRVKSYDFDMIVGVMGQSSFLGNEQRFYFGSLSAKEKGTRNYADVSSK
CCCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHH
AVGDLIEKIINTKDYKEQLATIQAMDRVLL
HHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKVQRVDLSQYVNRVKSYDFDMIVGVMGQSSFLGNEQRFYFGSLSAKEKGTRNYADVSSK
CCCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHH
AVGDLIEKIINTKDYKEQLATIQAMDRVLL
HHHHHHHHHHCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]