Click here to switch to the map view.

The map label for this gene is lpp20 [H]

Identifier: 109946787

GI number: 109946787

Start: 140878

End: 141408

Strand: Direct

Name: lpp20 [H]

Synonym: Hac_0164

Alternate gene names: 109946787

Gene position: 140878-141408 (Clockwise)

Preceding gene: 109946786

Following gene: 109946788

Centisome position: 9.07

GC content: 41.05

Gene sequence:

>531_bases
ATGAAAAATCAAGTTAAAAAAATCTTGGGATTGGGCGTCGTAGCCGCAGTAATGGTTGTAGGTTGTAGCCATGCCCCCAA
ATCAGGCGTTAGCAAAAGCAATACCAAATACAAAGAAGCGATTAAAGGTGCTCCTGAGTGGGTGATGGGGGATTTAGAAA
AAGTAGCGAAGTATGAAGAATATTCAGGCGTGTTTTTAGGAAGGGCTGAAGATTTGATTACAAGCAATGATGTGGATTAT
TCCACTAGTCAAGCGACAGCAAAGGCTAGGGCTAATTTAGCGGCGAATTTAAAATCCACTTTGCAAAAGGAATTGCAAAA
CGAAAAAGCTAGGACGATGGATTCTTCAGGCAAGAGTTCCATAAGCGGTTCTGATAGCGAGAAAATTTCCCAATTGGTGG
ATAACGAATTAGTCGCTTCTAAAATGCTCGCTCGTTATGTGGGTAAAGATAGGGTCTTTGTTTTAGTCGGTTTGGATAAA
GGGATCGTGGATAAGGTGCGATCTGAATTAGGCATGGTTAAGAAAAAGTAA

Upstream 100 bases:

>100_bases
CAGAAAAACCGGTGAAGAAGTGTGGAGCGGTGTTCGGCCTATTGTGAAGAACGCTAGCAACAAACACATAGCGTTTTAAC
GCTATTAAAAAGGATTAGCG

Downstream 100 bases:

>100_bases
AATTTGATGAAACATCTTGTTGTTGTGCTTGTTTTAGTTGTGGGGGTTATGTGGGGGAGGTCGTTACCTAAATGGGCGAA
AGAGTGCTCTAAAGAGGTAG

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MKNQVKKILGLGVVAAVMVVGCSHAPKSGVSKSNTKYKEAIKGAPEWVMGDLEKVAKYEEYSGVFLGRAEDLITSNDVDY
STSQATAKARANLAANLKSTLQKELQNEKARTMDSSGKSSISGSDSEKISQLVDNELVASKMLARYVGKDRVFVLVGLDK
GIVDKVRSELGMVKKK

Sequences:

>Translated_176_residues
MKNQVKKILGLGVVAAVMVVGCSHAPKSGVSKSNTKYKEAIKGAPEWVMGDLEKVAKYEEYSGVFLGRAEDLITSNDVDY
STSQATAKARANLAANLKSTLQKELQNEKARTMDSSGKSSISGSDSEKISQLVDNELVASKMLARYVGKDRVFVLVGLDK
GIVDKVRSELGMVKKK
>Mature_176_residues
MKNQVKKILGLGVVAAVMVVGCSHAPKSGVSKSNTKYKEAIKGAPEWVMGDLEKVAKYEEYSGVFLGRAEDLITSNDVDY
STSQATAKARANLAANLKSTLQKELQNEKARTMDSSGKSSISGSDSEKISQLVDNELVASKMLARYVGKDRVFVLVGLDK
GIVDKVRSELGMVKKK

Specific function: Could play a role in the pathogenesis of H.pylori by serving as an inflammatory mediator [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002217 [H]

Pfam domain/function: PF02169 LPP20 [H]

EC number: NA

Molecular weight: Translated: 18988; Mature: 18988

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNQVKKILGLGVVAAVMVVGCSHAPKSGVSKSNTKYKEAIKGAPEWVMGDLEKVAKYEE
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
YSGVFLGRAEDLITSNDVDYSTSQATAKARANLAANLKSTLQKELQNEKARTMDSSGKSS
HCCEECCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
ISGSDSEKISQLVDNELVASKMLARYVGKDRVFVLVGLDKGIVDKVRSELGMVKKK
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKNQVKKILGLGVVAAVMVVGCSHAPKSGVSKSNTKYKEAIKGAPEWVMGDLEKVAKYEE
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
YSGVFLGRAEDLITSNDVDYSTSQATAKARANLAANLKSTLQKELQNEKARTMDSSGKSS
HCCEECCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
ISGSDSEKISQLVDNELVASKMLARYVGKDRVFVLVGLDKGIVDKVRSELGMVKKK
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]