Click here to switch to the map view.

The map label for this gene is hslR [C]

Identifier: 109946735

GI number: 109946735

Start: 101041

End: 101298

Strand: Reverse

Name: hslR [C]

Synonym: Hac_0109

Alternate gene names: 109946735

Gene position: 101298-101041 (Counterclockwise)

Preceding gene: 109946737

Following gene: 109946734

Centisome position: 6.52

GC content: 41.09

Gene sequence:

>258_bases
ATGCGAATAGACAAATTTTTACAATCGGTGGGTTTGGTTAAACGGCGCGTTTTAGCGACAGATATGTGTAATGTGGGGGC
AGTGTGGATCAATGGGAGTTGCAGTAAGCCCAGCAAAGAAGTGAAAATAGGCGATGTGATTAGCTTGCGCTATTTAAAGG
GGATAGAAGAATACACGATTTTACAAATCCCCACTTTAAAAAATGTGCCGCGAAAAGACACACACCTTTATATCGCTCCC
AAAACAAAAGATCAATGA

Upstream 100 bases:

>100_bases
CAAATTCCTTAAAAAGAATGGTGGTTGAATGCTAACATGCTAAAACTAAAACCCTTATAAGTTGTGAATAAAAACTTAAA
GAATAGGGTAAAATAAACGC

Downstream 100 bases:

>100_bases
AACAAAACATTAATCAAGGATCAATCAATGAAAGAGTACAAAGACACCTTAAATTTAAACACAACCACCTTTTCTATGAA
AGGGAATTTGAGCGTCAATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 85; Mature: 85

Protein sequence:

>85_residues
MRIDKFLQSVGLVKRRVLATDMCNVGAVWINGSCSKPSKEVKIGDVISLRYLKGIEEYTILQIPTLKNVPRKDTHLYIAP
KTKDQ

Sequences:

>Translated_85_residues
MRIDKFLQSVGLVKRRVLATDMCNVGAVWINGSCSKPSKEVKIGDVISLRYLKGIEEYTILQIPTLKNVPRKDTHLYIAP
KTKDQ
>Mature_85_residues
MRIDKFLQSVGLVKRRVLATDMCNVGAVWINGSCSKPSKEVKIGDVISLRYLKGIEEYTILQIPTLKNVPRKDTHLYIAP
KTKDQ

Specific function: Involved In The Recycling Of Free 50s Ribosomal Subunits That Still Carry A Nascent Chain. Binds RNA More Specifically Than DNA. Binds With Very High Affinity To The Free 50s Ribosomal Subunit. Does Not Bind It When It Is Part Of The 70s Ribosome. [C]

COG id: COG1188

COG function: function code J; Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 9631; Mature: 9631

Theoretical pI: Translated: 10.26; Mature: 10.26

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIDKFLQSVGLVKRRVLATDMCNVGAVWINGSCSKPSKEVKIGDVISLRYLKGIEEYTI
CCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCEEECCHHHHHHHCCCCCEEE
LQIPTLKNVPRKDTHLYIAPKTKDQ
EECCCCCCCCCCCCEEEEECCCCCC
>Mature Secondary Structure
MRIDKFLQSVGLVKRRVLATDMCNVGAVWINGSCSKPSKEVKIGDVISLRYLKGIEEYTI
CCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCEEECCHHHHHHHCCCCCEEE
LQIPTLKNVPRKDTHLYIAPKTKDQ
EECCCCCCCCCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9252185 [H]