Definition Pseudoalteromonas atlantica T6c chromosome, complete genome.
Accession NC_008228
Length 5,187,005

Click here to switch to the map view.

The map label for this gene is Not Available

Identifier: 109898233

GI number:

Start: 2319872

End: 2321980

Strand: Direct

Name: Not Available

Synonym: Patl_1916

Alternate gene names: NA

Gene position: NA

Preceding gene: 109898228

Following gene: 109898234

Centisome position: NA

GC content: NA

Gene sequence:

>2109_bases
ATGAGTCAAGCAGTGATAGCTGAAGTACAAGGAAATGTCGCGGTTTTGTATATGCAGAGCCCACCGGTTAATGCGTTATC
TAAGTCAGTTCGTGTTGGCTTAATTGAAAACATTAACCAAGCGCTGGACAACGATCAGGTCGAAGCAATTGTAATCTCAT
CTAAGTTAGCATTGTTCTCTGGCGGTGCTGATATCAGTGAATTTTCTGGCGGTAATTTAGAGCCGCATCTACCTACCGTT
TTAGATGTTATCGAAAATGCAAGTAAGCCAGTTATTGCCGTACTCAATGGCCCTGCTTTTGGTGGTGGTCTAGAAGTGGC
GCTTTCATGTCATTATCGCGTTACGTTTGCCAGTAACAAGGTTGGCTTGCCAGAAGTGAATTTAGGTATATTACCTGGCG
CGGGCGGTACTCAGCGCCTTCCTCGTTTGGCAGGCGTGGCAAAAGCACTCGATATGATAGTGTCGGGACGCCCAGAAAAA
GCCAGCAAGTTAGCAGGTGTATTTGACTTAATAGTTGAAGACCCAACAAACTTACTCAGTGAAGCAATGGCATTTGTCCA
AAAAGTGGTTGCTGAGGGTGCGAAGGTGCGCAAAACCTCTGATGTGGCTATTGATAAAGCTAGCGCGCCTGATGAGCTAT
TTGCTCAATATCGTCAAGGCCTTAAAAAGCAAGCTCGCGGATTTTTTGCCCCTGAGCGTTGTATCCAAGCTGTTGAAGCA
TCTGTTTCGTTGCCATTTGAGCAAGGCTTGGTGCGTGAAAGTGAATTGTTCATGGAATGCATGGGCTCGAAAGAAGCTCG
CGCACAGCAGCACTTTTTCTTTGCAGAGCGCGCGGCTGCTCACGTGAGCGATTACGACAAATCCACACCTACCCGAGATA
TCAAAAAGGTCGGCATTATTGGCGCAGGCACCATGGGCGGCGGGATCGCTATGAACTTCGCCAATGCTGGTATACCGGTC
ATCATGCTTGAACTTAAGCAAGAGGCATTGGACAAGGGCCTTGCGCTTATTCGTAAGAACTACGAAAACTCCGCTAAGAA
AGGCAAGCTTACCCAACAAGCTGTTGAAGATCGCATGGCGTTATTGCAAGGTTCAACTGAATACGAAGCACTAAGCGACG
TAGATTTAGTTATTGAAGCCGTTTTCGAAAAGATGTCAGTCAAAAAAGAAGTATTTGGTGCACTGGATAAAGTATGTAAG
AAAGGCGCCATACTCGCTTCAAACACCTCTACTTTAGATGTCAACGAAATTGCGGCGTCTACATCACGTCCTGAAGATGT
GATTGGTTTGCACTTCTTTAGCCCAGCTAACGTGATGAAACTGCTTGAAGTCGTCAAAGCTGAAAAAACCTCTGCAGACG
TTATCAAAACCTGTATGCAGATGGCGAAGAAAATCAATAAAGTCGCTGTGCTGGTTGGTGTTTGTTTCGGCTTTGTGGGT
AACCGCATGATCGAACCGTACGGCCGTGAAGCCGCTCGCTTAATGCTTGAAGGGGCTACGCCGCAGCAAATCGACAAAGT
GATTTACGATTTTGGTTTGCCTATGGGCCCATTCACCATGGGAGACATGGCAGGCTTAGACATCGGTTTTTACGTACGCG
AATCACGACGTGAATTTATTGCCCATGATCCGAGTTACTGTGTGGTATCTGACCGCTTAGTGAAACAAGGTCGTGTCGGT
CTTAAATCTGGTCGCGGTGCTTATATGTATGAGCCGGGTAACAGAATGCCGATCCCTGACCCTGAAGTGGTTGAAATGGC
AAAAGAAGAGGCCGCACGTTTAGGCATTGCCCAACGTGACATCTCAGACCAAGAAATTCTAGAGCGCATTATCTTTCCTT
TGATTAACGAAGGTGCATTGATTTTGGAAGAAGGTATTGCCGCTAAATCAAGCGATATCGATGTTATTTATGTTTATGGT
TACGGCTTCCCGGTTTACCGCGGCGGTCCTATGCAATACGCAGATGAAATTGGCTTGAAAAAAGTTTATGACGCGATGTG
TAAATATCGCGATGAATTAGGTGAGTACGGCGGCCACTGGTTTGAACCAGCTCCGTTGTTGAAACAACTGGCTGAGCAGG
GCAAACGCTTTGCAGATTTCAAACAGTAA

Upstream 100 bases:

>100_bases
TATTACCTCTAATTATTAATCAATATAAAACCAATAAATTTGGATGATTCAACTCCCTGACCTAGTATTCGTTTACTAAT
TTATCTGGTAAGAGGTGTTT

Downstream 100 bases:

>100_bases
CACCTACTTAACCGATTAAATAGAGAGAAAAATGATGAAAGAAGCAGTCATAGTATCAACCGCAAGAACTCCAATTGGCC
GTGCTTATAAAGGTGCGTTT

Product: 3-hydroxyacyl-CoA dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>702_residues
MSQAVIAEVQGNVAVLYMQSPPVNALSKSVRVGLIENINQALDNDQVEAIVISSKLALFSGGADISEFSGGNLEPHLPTV
LDVIENASKPVIAVLNGPAFGGGLEVALSCHYRVTFASNKVGLPEVNLGILPGAGGTQRLPRLAGVAKALDMIVSGRPEK
ASKLAGVFDLIVEDPTNLLSEAMAFVQKVVAEGAKVRKTSDVAIDKASAPDELFAQYRQGLKKQARGFFAPERCIQAVEA
SVSLPFEQGLVRESELFMECMGSKEARAQQHFFFAERAAAHVSDYDKSTPTRDIKKVGIIGAGTMGGGIAMNFANAGIPV
IMLELKQEALDKGLALIRKNYENSAKKGKLTQQAVEDRMALLQGSTEYEALSDVDLVIEAVFEKMSVKKEVFGALDKVCK
KGAILASNTSTLDVNEIAASTSRPEDVIGLHFFSPANVMKLLEVVKAEKTSADVIKTCMQMAKKINKVAVLVGVCFGFVG
NRMIEPYGREAARLMLEGATPQQIDKVIYDFGLPMGPFTMGDMAGLDIGFYVRESRREFIAHDPSYCVVSDRLVKQGRVG
LKSGRGAYMYEPGNRMPIPDPEVVEMAKEEAARLGIAQRDISDQEILERIIFPLINEGALILEEGIAAKSSDIDVIYVYG
YGFPVYRGGPMQYADEIGLKKVYDAMCKYRDELGEYGGHWFEPAPLLKQLAEQGKRFADFKQ

Sequences:
NA

Specific function: NA

COG id: COG1250

COG function: function code I; 3-hydroxyacyl-CoA dehydrogenase

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA