Definition Pseudoalteromonas atlantica T6c chromosome, complete genome.
Accession NC_008228
Length 5,187,005

Click here to switch to the map view.

The map label for this gene is Not Available

Identifier: 109898096

GI number:

Start: 2133682

End: 2135715

Strand: Direct

Name: Not Available

Synonym: Patl_1776

Alternate gene names: NA

Gene position: NA

Preceding gene: 109898095

Following gene: 109898097

Centisome position: NA

GC content: NA

Gene sequence:

>2034_bases
ATGTCTAATGCTCTGTCGCCTGCTCAAAGGCTGACGCAAATTATTAACACCATCAACGAGTACAATTACCAATACTACGT
ACAGGACAACCCATCCGTGCCTGATGCCGAATATGATCGCTTAATGCGTGAATTGCTGGACATTGAAAATAACCACCCTG
ATCTACGCAGCCCGGATTCTCCCTCGCAAAAAGTGGGCGGAGCAGCTCTTAGCGCGTTCGAACAGGTTGAGCACGAAGTA
CCCATGTTGTCTCTTGATAATGCGTTCGATGAAGATGACATGCAGGCATTTGAAAAGCGCATCAAAGACCGTTTAAAGAT
AAGCAGTGAAATTAGTTTTAGCTGCGAGCCTAAACTTGATGGCCTAGCGGTGAGTATTTTGTACGAAAACGGGCAGTTAG
TTCGCGCTGCCACACGGGGCGATGGTCGAGTAGGTGAAAACATCACGACTAACGTACGTACCATTGCTAACGTGCCTTTG
CGCTTGCGAGGAGAGAACTTTCCGAGCCGATTAGAAGTGCGCGGTGAAGTCATCATGACCCGAGCAGGCTTCGTTACTTT
AAATGAAGCACAGATTAAAAAGGGTAAAAAACCGTTTGTTAACCCGAGAAATGCCGCTGCCGGGAGTTTGCGTCAGCTTG
ACCCGAAGATCACCGCAGCACGACCTTTGCTCTTTTACAGTTACTCGCTGGGCTTGGTCGAAAACGAACAACAACCTCTG
GGCGAAACGCATTCATCGCGCTTAGCTCAGTTAAGCGAATGGGGCCTACCTTTGAGCAAAGAGCTTGAGGTGACGCAGGG
CGCAACACAGTGCTTAACCTATTTTCATAAGATTGGAGAGCTGCGAAGCCAGCTAAGCTATGACATAGACGGCGTAGTAT
TCAAAGTTGATAATATTGCCATGCAGCAAGAGCTGGGTTTTGTAGCTCGTGCGCCGCGCTGGGCGATAGCCCATAAGTTT
CCTGCGCAAGAAGAGATGAGCACCTTGCTCGACGTTGAGTTTCAAGTCGGCAGAACCGGTGCAATTACGCCAGTAGCAAG
GCTCGAACCGACGTTTGTTGGAGGCGTGACGGTTTCTAACGCTACGCTGCATAATCAAGATGAAATCAATCGTTTAGGTA
TCAAGATTGGTGACAGCGTCATTATTCGCCGAGCAGGAGATGTTATCCCGCAGATAGTGGCGATAGTGGCAGATAAGCGC
CCAGATGACGCTAAAGACATTGTATTCCCTGAAAGTTGCCCGGTCTGTGATTCAGCGATTGAAAAACTAGAAGGCGAAGC
CGTGGCTCGCTGCACGGGAGGCTTGTACTGCAAGGCTCAGCGTAAAGAAGCCATGAAGCATTTTGCATCACGCAAAGCGC
TTGACGTGGATGGCCTCGGGGATAAATTAATTGAGCAATTAGTCGACGCTGAAATGGTTAAAAGCCCGGCTGATTTTTTT
GCTCTGGATATCGCTCCTTTATCAAGTATGGAGCGAATGGGCGAAAAATCGGCGGTAAATTTAGTTAACGCCTTAGAAAA
AAGCAAAAAAACCACATTAGCTAAATTCTTATATTCTTTAGGCATCCGTGAAGTGGGCGAGGCGACAGCGCAGAATTTAG
CACAACACTTTTTAACGTTAGAGGCTATTGAGCAAGCAGATCTGGACGCGCTACAAGCAGTATCGGATGTCGGTGTTATT
GTGGCTCAGCACGTGTTTAACTTTTTCAAGGAAGAGCACAACCTCGAAGTGATTAGTGCACTGTTAGAGGCCGGTGTACA
TTGGCCAAAAATCGAAAAGCTAGCATTAGATGAGTTGCCGCTTGCAGGGCAGGTATACGTGCTCACCGGGACGTTAAATG
TGATGGACCGAAACTCGGCTAAAGCGAAGTTGCAAAGCTTGGGAGCAAAAGTATCGGGCAGTGTATCGGCTAAAACCGAT
TGCTTAGTGGCCGGTGAAAAGGCCGGCTCTAAGTTAACTAAAGCTCAGGATTTGGGGGTAAAAGTCATGAACGAAGATGA
CATGTTAGCCATGTTCGCCGACCTTGAAGGTTAA

Upstream 100 bases:

>100_bases
ACGTCGAACGCATCCGTGAATTTGAACGTAAGAGAATGATACACCGTTAATTTTGGGGAGCGCCTGCTCCCTGTTTTCTT
TGAATATCTTGGAACATTAT

Downstream 100 bases:

>100_bases
AGCATGGATACATCATTTATTTTCGATGCGTTAGCGACCTTAACCCGTTGGACAAGTCCATATTATACTGAAATTTCGAT
GACGATCGTGGCGACAGTAT

Product: DNA ligase, NAD-dependent

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>677_residues
MSNALSPAQRLTQIINTINEYNYQYYVQDNPSVPDAEYDRLMRELLDIENNHPDLRSPDSPSQKVGGAALSAFEQVEHEV
PMLSLDNAFDEDDMQAFEKRIKDRLKISSEISFSCEPKLDGLAVSILYENGQLVRAATRGDGRVGENITTNVRTIANVPL
RLRGENFPSRLEVRGEVIMTRAGFVTLNEAQIKKGKKPFVNPRNAAAGSLRQLDPKITAARPLLFYSYSLGLVENEQQPL
GETHSSRLAQLSEWGLPLSKELEVTQGATQCLTYFHKIGELRSQLSYDIDGVVFKVDNIAMQQELGFVARAPRWAIAHKF
PAQEEMSTLLDVEFQVGRTGAITPVARLEPTFVGGVTVSNATLHNQDEINRLGIKIGDSVIIRRAGDVIPQIVAIVADKR
PDDAKDIVFPESCPVCDSAIEKLEGEAVARCTGGLYCKAQRKEAMKHFASRKALDVDGLGDKLIEQLVDAEMVKSPADFF
ALDIAPLSSMERMGEKSAVNLVNALEKSKKTTLAKFLYSLGIREVGEATAQNLAQHFLTLEAIEQADLDALQAVSDVGVI
VAQHVFNFFKEEHNLEVISALLEAGVHWPKIEKLALDELPLAGQVYVLTGTLNVMDRNSAKAKLQSLGAKVSGSVSAKTD
CLVAGEKAGSKLTKAQDLGVKVMNEDDMLAMFADLEG

Sequences:
NA

Specific function: NA

COG id: COG0272

COG function: function code L; NAD-dependent DNA ligase (contains BRCT domain type II)

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA