Definition Pseudoalteromonas atlantica T6c chromosome, complete genome.
Accession NC_008228
Length 5,187,005

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Identifier: 109897442

GI number:

Start: 1352175

End: 1354994

Strand: Direct

Name: Not Available

Synonym: Patl_1117

Alternate gene names: NA

Gene position: NA

Preceding gene: 109897441

Following gene: 109897443

Centisome position: NA

GC content: NA

Gene sequence:

>2820_bases
ATGAGCGTCCATAAGCAGTTCCGCCTTAAAAATAATATGTTTAGTAGTTTAGTACCAGGAATAGTGCTTCTGTCATGTTT
TCCGTCATTCACACATGCCCAGCAAGAAACAAGTGAATTGACCAAGCAAGAAAAGCAAGCAGACGCATCTGATATTGAAC
AGGTTGTCATAACAGGTTCACGATTGCGTCAAGATGGGTCTATGGCTCCAACTCCCGTCACAGTTCTTTCAAGTGATGAA
ATTGAAGCTGGTGGCAAAACCAATATCGCAGACTTTATTAATGATTTGCCACAATTACAAAACTCAAGCACGCCCCGTTC
TATTGGTTTTACGTCTAGCTCAGGTTTACAAGGCGCAAATTTACTGAATCTACGTAACCTTGGAACAAACCGAACACTGG
TTTTACTTGACGGTCGCCGCGTTGTTCCTGGGGTACCTACGGGCTCCGTTGATTTAAGTCTGTTGCCAAGTGCATTGGTT
AAACGCGTAGATATCGTAACCGGTGGGGCTTCTGCAGCATATGGGGCTGACGCAGTAGCTGGCGTCGTAAACTTAGTACT
TGATACAAAATACACAGGTGTAAAAGCGCATATTCAAGGCGGCAGTTCATCTGAAGGTGATGCAGAGAGTAAGTCCGGCT
CAATTGCTGGAGGGACCAGTTTTGCCAACGGTCGAGGTCACGTGGTAGGTAACATTGAATACGCTGAAAACAAGGCCGCT
TTTGCGAGTGAACGAGACTGGGCTAAAAGCAAAAGTATTGTCCCGAATCCAAATTACACCCAAGGTGGCGCAGAGCATGA
GCGCATTATTGTAGACAGTGGATTGGGCCTAGCAACACCAGGGGGCTTAATCATCAACACTCCTCTGCGTGGTACGCAAT
TTGACGACAATGGTAACCCTGTTCCCTTCGATTTCGGCGCGCCCACAGGAAACGGGTTTATCGCAGTCAGCCCAGACGCC
TATAACCCTATTGCGTTGCAACAACTTATTGCACCGTTAGAGCGATACAGCGGTTTTATGCACGCCACTTACGATCTGAC
TGAAAACACGACCATTTATGGTGAAGCGTCTTACGGTAAATCCACCGTTCGTCAAGAAACGTTACCGTTATTCCGCTTTG
CAAATCAAGTGGTGCAGAATGATAACCCGTATCTTGACGCTGTGACTGCGCAAAGACTAAGCGATGCCGGTGAAAGTACT
TTCGTACTCGGCAAATTAGGTGTGAACCTTGGTGTGGCTGAACCGGTTGGTGAAAGGGAAATTCAACGTTACCTTGTGGG
AGTTGACGGCGAACTAAGCGGTGATTGGTCGTGGAGCGCTTATTATCAGTATGGGGATGTCGATATTAATGTTCGCGCCC
AAAATAACCCAATCGTATCGCGTTTTATTTTGGCTGCTGATGCCGTTACCGATGATGCTGGTAACGTCGTATGCCGATCA
TCGCTAAGCGATTCAGGCAATGGTTGTTTACCTTACAATGTATTTGGCAATCAACCTGTTGCTGATGATGTAAAGGCCTA
CCTTACTGGCACTGCCGTGTCTAACCAAAAATTAAAGCAACACGTTTGGTCAGCGAGCATGACGGGTGTTGTTGCAGATC
TTTGGGCTGGGCCGCTGACTGCGGCTTTTGGCGCTGATTATCGCAAAGAGTCCGGCTCAGGGGATGCTGATGAGCAATCT
ATGAACAATGAATTTTTTGTGGGGAATTTCAAACCCTTCTCAGGCAAGGTAAATGTCAAAGAGGGATATTTAGAACTTGG
CTTACCGGTTCTGGATGATATGGACTATGGAACAATAGACATCAACTCTGCTATTCGCTGGACCGATTATAGCAATAGTG
GCTCAGTTAGAACGTGGAAGGCAGGGGTTATCTACTCTCCTATTGATGAGCTTCGTTTTCGCGTAACACGTTCTAGCGAT
ATTCGTGCGCCAAACATCAACGATTTATTCAGTGGGGGACTCGTTAGAGCCTCAGCAGTGAATGACCCATTCAGAGACGG
TGAATCTACCCAGTATTTAGAGCGTTCAGGCGGTAACCCAGATCTTCGCCCCGAAGAAGCTGACACTTTGACTGTGGGAG
GTTCATATGCCCCAGATTGGTTGCCAGGTTTTAGCATGTCTGTAGATTATTTCGATATAGATATAAACGATGCGATTGGC
GATATTTCATCGCAAAATATTCTCGACAATTGCTTTGAAGGCCAAACAGAATACTGCGCCTATGTCGCGCGCAATAGTGA
CGGTCTTGTCACCCAGATATCGAAACTACCATTTAACTTTCAAGCCGAGCAAATGACCGGCGTTGACATGGAATTCGCTT
ACACCATGGAGCTAGGGGAGGGCGAGTTAAAAATGCGCGCTTTCGCTACCCACGTTACCAAGCTTTCTATAGGCGTACCA
GGAACGCTCAACTTTGTTAGTCGCAAGGGAGAGGTTGGCAACAATGCTGGTGGAGCTGATTCAGGTGCCCCAGATTGGCG
CGGAATTGGCAACATTGGTTATGAAACACATGGCGGAACAAATATTGGCGCCACATTGCGCTTCATTGGTGAAGCTAAAG
TAGAGAGCGACTTTGCCAGTAATTACTTGCAGGGCAACGACGTGCCGTCACGCACTTATCTCGATTTGAATATCTCCCAG
AAATTCGATTTATCCTCGGGCACCTTAAAGGTATTCGCTGTAGTCGATAACGTATTCGATCGAGACCCTCCGGTGGTTGT
TTCGCTTCAAGGTACGTCACCATTAGATCTACCTACCAATGGCGCTTTATACGACACAATTGGACGAACTATACGTATTG
GGGCGCGTGTTGAGTTTTGA

Upstream 100 bases:

>100_bases
GCATCGCTTGTGACAGATCACCGATATACGGAGTCTCCACTATGTGTAGAGAAATGTTGGATTCGACTAACCACGGAATA
TTCTTTAAAGAGGAAAAAAT

Downstream 100 bases:

>100_bases
TCTCAATGACCCGCAGGCGCTTGGATTAGCCGGCGCCTTGAGCATTATGGTGCGGGGCGAGCCTACATCAAGCGGCTCTG
TCGCTAAGTCTGTTTGTGTT

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>939_residues
MSVHKQFRLKNNMFSSLVPGIVLLSCFPSFTHAQQETSELTKQEKQADASDIEQVVITGSRLRQDGSMAPTPVTVLSSDE
IEAGGKTNIADFINDLPQLQNSSTPRSIGFTSSSGLQGANLLNLRNLGTNRTLVLLDGRRVVPGVPTGSVDLSLLPSALV
KRVDIVTGGASAAYGADAVAGVVNLVLDTKYTGVKAHIQGGSSSEGDAESKSGSIAGGTSFANGRGHVVGNIEYAENKAA
FASERDWAKSKSIVPNPNYTQGGAEHERIIVDSGLGLATPGGLIINTPLRGTQFDDNGNPVPFDFGAPTGNGFIAVSPDA
YNPIALQQLIAPLERYSGFMHATYDLTENTTIYGEASYGKSTVRQETLPLFRFANQVVQNDNPYLDAVTAQRLSDAGEST
FVLGKLGVNLGVAEPVGEREIQRYLVGVDGELSGDWSWSAYYQYGDVDINVRAQNNPIVSRFILAADAVTDDAGNVVCRS
SLSDSGNGCLPYNVFGNQPVADDVKAYLTGTAVSNQKLKQHVWSASMTGVVADLWAGPLTAAFGADYRKESGSGDADEQS
MNNEFFVGNFKPFSGKVNVKEGYLELGLPVLDDMDYGTIDINSAIRWTDYSNSGSVRTWKAGVIYSPIDELRFRVTRSSD
IRAPNINDLFSGGLVRASAVNDPFRDGESTQYLERSGGNPDLRPEEADTLTVGGSYAPDWLPGFSMSVDYFDIDINDAIG
DISSQNILDNCFEGQTEYCAYVARNSDGLVTQISKLPFNFQAEQMTGVDMEFAYTMELGEGELKMRAFATHVTKLSIGVP
GTLNFVSRKGEVGNNAGGADSGAPDWRGIGNIGYETHGGTNIGATLRFIGEAKVESDFASNYLQGNDVPSRTYLDLNISQ
KFDLSSGTLKVFAVVDNVFDRDPPVVVSLQGTSPLDLPTNGALYDTIGRTIRIGARVEF

Sequences:
NA

Specific function: NA

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA