Definition Pseudoalteromonas atlantica T6c chromosome, complete genome.
Accession NC_008228
Length 5,187,005

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Identifier: 109896504

GI number:

Start: 203761

End: 205674

Strand: Direct

Name: Not Available

Synonym: Patl_0173

Alternate gene names: NA

Gene position: NA

Preceding gene: 109896503

Following gene: 109896505

Centisome position: NA

GC content: NA

Gene sequence:

>1914_bases
ATGAAGCCTAAAGCCAAAATTCGCTTAGGCGATCTTCTTGTACAAGAAGGGATTATTAGCGAAGAACAATTGATGCAGAC
TCTTTCTGCACAAAAGCAAAGTGGCCGTAAATTAGGTTACATGCTTATTGAACTTGGCTTTATGACCGAGAATCAGTTGC
TTACCTTTTTATCTCAGCATTTGGGTGTGCCATTAATTGATGTAACCCAATATCGGGTGTCGGTAGAAGCGGTATTGCTA
CTGCCAGAGGTTCAGGCTCGACGTTACAGAGCGTTAGTGCTTGACGATAAAGGGGATCATTTACTGGTCGGTATGAGTGA
CCCCGCTGATTTGGCCGCTCTTGATATTTTATCTGGTGTGTTACCCAAACCTGTTAAAGTCGCTGTTGTTAGTGACGCGC
AATTGTTCCAAGCGTACGATCGTTTCTACCGTCGTACGGAAGATATCGCTTCTTTCGCCCAAGAGTTAGCGGAAGAATAC
CAAGATGATGAAGAGTTTGATTTCGATACAGGCGTCGACAATGAGCAAGACACTGCCGTAGCCCGTTTACTGCAATCGAT
TTTTGAAGATGCACTACAAACCAAAGCCTCAGATATCCATATCGAACCGGACAGCGAGATGTTACGTATTCGCTTAAGGG
TGGATGGCGTACTGCAAGAAAACATCATCAAGGAAAAGAACATAGCCTCAGCCTTAGTATTAAGGTTGAAGCTAATGTCT
GGGCTCGATATTTCAGAGAAACGCCTTCCACAGGATGGGCGGACGAATATGCGTATCAAAGGCCACTCCATCGATGTACG
GGTCTCTACTATGCCAGTACAGAATGGTGAATCAGTGGTGATGCGATTGCTTGATCAGTCAGCCGGTGTGCTTTCTCTCG
AGCAAACCGGTATGCCAGCCGCCTTACTAAAACGCTTTCGAGTGTTATTGAGACGCCCCCACGGTATGATTTTGGTTACG
GGACCCACAGGCTCTGGTAAAACAACCACGCTTTACGGTGCGTTAAGTGAGTTAAATCAGCCTTCTGCTAAAATTATCAC
AGTAGAAGACCCCGTCGAGTACCGCTTACCACGCATCAATCAAGTGCAGACCAATAGTAAGATTGGCTTGAATTTCTCCA
ATGTTTTACGCACAACACTAAGGCAAGATCCTGACATCATCATGGTCGGGGAAATGCGAGACCAAGAAACGGCGGAAATT
GGTCTTCGAGGCGCTTTGACGGGTCACTTAGTGTTATCAACCTTGCATACCAATGATGCTATCAGCAGTGCGGTACGTCT
ACTTGATATGGGAGCCCCAGGGTATTTAGTGGCGAGTTCTTTGCGCGCTGTTATCGCCCAGCGCTTGGTGCGTAAAGTGT
GTGAAAGCTGCAGTGAGGCATACCAACCCACACGCGAAGAATCCTTGTGGCTGAAAAGTATCGACTCTCAAGTGGTTAAT
GTGACGTTTCGCCGCGGCCGTGGCTGTCAAACCTGCAACAATACAGGCTATCGCGGCCGAGTAGGTGTGTTTGAGTTATT
AGAAATGACAGAGAGCATGATGAATGCATTGAAAACCAATGACTCTGTTCAGTTTGGCCAAGCTGCACTTCACAGCCCTG
GCTTCGTGCCTTTGGCAAAAGTTGCATTAACGTATGCCAAAATGGGGATAACCACCGTCGATGAAGTATTGAAACTGATT
GAAATGGTGGCTGATGAACAAGCACGAGAGCCAGGGCTAGAAGAAAACGCTGAACTTGTTGAAATGACAGAGACTCAATC
CAGCCAAGCTGCCTCGCATGAGGGGAATGCAGAGTCTGGCGCATCGCCCACTTCAGCGGCTCGCTCTGAGAATAATAAAC
CGACTCCATCAAGTGGTGAGTTCTCTTTCGAGCTAGAGCCTCGCGACGATGGCCCAGGCGGTAACAATGGCTAA

Upstream 100 bases:

>100_bases
AAGCGTTAATGAGTTATCAAAAAGCAGATGACGAGCAACAGTTGTCACCGCAAGTGATTACGTTTGTACGTCAACGATTG
AAAGAATTGGTTGGAATAGA

Downstream 100 bases:

>100_bases
TTTCACCTACAAAGCGCGTAACGCGAGTGGTGAACTGGCCTCAGGTAGCCTAGAAGCGAGTGATGCTTCTAGTGTGGCGC
AAATTTTACTTGGCCGAAAA

Product: type II secretion system protein E

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>637_residues
MKPKAKIRLGDLLVQEGIISEEQLMQTLSAQKQSGRKLGYMLIELGFMTENQLLTFLSQHLGVPLIDVTQYRVSVEAVLL
LPEVQARRYRALVLDDKGDHLLVGMSDPADLAALDILSGVLPKPVKVAVVSDAQLFQAYDRFYRRTEDIASFAQELAEEY
QDDEEFDFDTGVDNEQDTAVARLLQSIFEDALQTKASDIHIEPDSEMLRIRLRVDGVLQENIIKEKNIASALVLRLKLMS
GLDISEKRLPQDGRTNMRIKGHSIDVRVSTMPVQNGESVVMRLLDQSAGVLSLEQTGMPAALLKRFRVLLRRPHGMILVT
GPTGSGKTTTLYGALSELNQPSAKIITVEDPVEYRLPRINQVQTNSKIGLNFSNVLRTTLRQDPDIIMVGEMRDQETAEI
GLRGALTGHLVLSTLHTNDAISSAVRLLDMGAPGYLVASSLRAVIAQRLVRKVCESCSEAYQPTREESLWLKSIDSQVVN
VTFRRGRGCQTCNNTGYRGRVGVFELLEMTESMMNALKTNDSVQFGQAALHSPGFVPLAKVALTYAKMGITTVDEVLKLI
EMVADEQAREPGLEENAELVEMTETQSSQAASHEGNAESGASPTSAARSENNKPTPSSGEFSFELEPRDDGPGGNNG

Sequences:
NA

Specific function: NA

COG id: COG2804

COG function: function code NU; Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA