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The map label for this gene is 108813730

Identifier: 108813730

GI number: 108813730

Start: 4077768

End: 4079156

Strand: Reverse

Name: 108813730

Synonym: YPN_3570

Alternate gene names: NA

Gene position: 4079156-4077768 (Counterclockwise)

Preceding gene: 108813731

Following gene: 108813729

Centisome position: 89.96

GC content: 53.64

Gene sequence:

>1389_bases
ATGGATATCACGTCACAACATCCCTGGCATGTCTTGTTACAAGCCCCTTTGTCACCTGAGCAGACCGCACAAGCCCTGGC
CGATGATGACCCCCAATGGGAATATATCGACGGCCAGATGGTGAAACTGGGGTCATTGGCCCACGCCACGCTGAATATTG
ATGATATTCAGCAACAAGCCATGGCGCTGTTATCACAGAAAAGTAAAGACTTCCGGCTCGTGGTGCATCTACTGCGCACC
CTACAACACGGGGGCCAGCCAGATGAATTAATGCTGGCGATGTCGTTGCTGACCGAATACGTCCAGCTATTTTGGACTAC
GGCCTGGCCGCAAAATCCTTTACACAAACGGCGCTTTGCTCAACAAATCCTAAAACGCTTTGACAGCGCCAGCAGCAGTT
TTAGCCAACGAGCGGACGAGGCTCAACGTGAGAATGTGCAAGGATTATTGGCACATTTAGCACAGGTTTGGCATAGCCGT
GAGCCGGGTCTGGCTAAAGAGGTGGATGCATTACGCAGCCGCTATGCGCGGCCACCGGAGCGGGTTATCGAGGCAGTGGC
TTCTGATGAACCGCTCTCATCCAACACCTTGGCGGCGGCAATGGCCGCCACCCCCGTTAGCCCAAGCCTCGCCATAGATA
ACACGAGCGACAGAGCCTGGCGGCAGACCTTGCTGAAAATGGCGGATCTACTCAGCGAACAGCAACCCGATGCCGCTATC
GGTTTCCGGCTACGCCGCCATGCCGTATGGGGCGCGTTAACCGCACCACCTATGGCGCAGAGCGATGGCCGCACCCCGTT
AGCCGCGGTATCTGCGGATCGAACCGCCGATTACTTAGCACGTCTGGCTAATGCCGATTTGCCTTTGTGGCACCAAGTGG
AGCAGAGCCTCACCCTCGCGCCTTATTGGCTGGATGGACATGTGCTTTCGGCACAAATCGCCCTGCAACTGGGTTATGAC
GCGGTGGCACAGGCTATCCGTGATGAACTCAGCGTTTTTTTAGCCCGTATTCCCGCATTAAAAACCCTCTTTTTTACGGA
TATGACGCCATTCCTCTCCTCTGAATCTGCCGCCTGGTTACAGCAGGATGCGAATCATCAGGGAAGAAGTCGCACTATTG
AACAGGATGAAATTTGGCAATGCTATCAACAGCAAGGATTGGAAGCCGCACTACAGATGATAAACCGGCAACCACAGCAA
TCCGAACCTCGGGACCGTTTTTACCATCAATTGCTCAGTGCACAGTTGTTCGAAAAAGCAGGGTTAACCGCATTGGCGCA
GCAGCACTACCACAGCTTATTACTGGTAGGGCAGCAATTACAGCTAAGCGAATGGGAACCTGCGTTGATCGCTCTACTGA
CAGAAAAACAGCGACAACTCAAACCATGA

Upstream 100 bases:

>100_bases
TCGAAGGGGCAAACGGTGCTTTTCCTCGGCTGACATTTACTCTTTCTCAGTTAACGCCAGCGTTGAAACCGCTGCGTAAC
GCATGTCATTGGTGAGGCAT

Downstream 100 bases:

>100_bases
TCGCCATGGAATGCCACAGGAGCGTTAGCGCATGAAATTGCCGTTCTTTATACGCATAGCCAAGCCCGCCATTCCTCGCC
TTAAAGCGTCAATACCGGTG

Product: hypothetical protein

Products: NA

Alternate protein names: ImpA Domain-Containing Protein; Protein ImpA; Type VI Secretion-Associated Protein Family; ImpA Domain Protein; Type VI Secretion Protein VasJ; ImpA-Related Domain-Containing Protein

Number of amino acids: Translated: 462; Mature: 462

Protein sequence:

>462_residues
MDITSQHPWHVLLQAPLSPEQTAQALADDDPQWEYIDGQMVKLGSLAHATLNIDDIQQQAMALLSQKSKDFRLVVHLLRT
LQHGGQPDELMLAMSLLTEYVQLFWTTAWPQNPLHKRRFAQQILKRFDSASSSFSQRADEAQRENVQGLLAHLAQVWHSR
EPGLAKEVDALRSRYARPPERVIEAVASDEPLSSNTLAAAMAATPVSPSLAIDNTSDRAWRQTLLKMADLLSEQQPDAAI
GFRLRRHAVWGALTAPPMAQSDGRTPLAAVSADRTADYLARLANADLPLWHQVEQSLTLAPYWLDGHVLSAQIALQLGYD
AVAQAIRDELSVFLARIPALKTLFFTDMTPFLSSESAAWLQQDANHQGRSRTIEQDEIWQCYQQQGLEAALQMINRQPQQ
SEPRDRFYHQLLSAQLFEKAGLTALAQQHYHSLLLVGQQLQLSEWEPALIALLTEKQRQLKP

Sequences:

>Translated_462_residues
MDITSQHPWHVLLQAPLSPEQTAQALADDDPQWEYIDGQMVKLGSLAHATLNIDDIQQQAMALLSQKSKDFRLVVHLLRT
LQHGGQPDELMLAMSLLTEYVQLFWTTAWPQNPLHKRRFAQQILKRFDSASSSFSQRADEAQRENVQGLLAHLAQVWHSR
EPGLAKEVDALRSRYARPPERVIEAVASDEPLSSNTLAAAMAATPVSPSLAIDNTSDRAWRQTLLKMADLLSEQQPDAAI
GFRLRRHAVWGALTAPPMAQSDGRTPLAAVSADRTADYLARLANADLPLWHQVEQSLTLAPYWLDGHVLSAQIALQLGYD
AVAQAIRDELSVFLARIPALKTLFFTDMTPFLSSESAAWLQQDANHQGRSRTIEQDEIWQCYQQQGLEAALQMINRQPQQ
SEPRDRFYHQLLSAQLFEKAGLTALAQQHYHSLLLVGQQLQLSEWEPALIALLTEKQRQLKP
>Mature_462_residues
MDITSQHPWHVLLQAPLSPEQTAQALADDDPQWEYIDGQMVKLGSLAHATLNIDDIQQQAMALLSQKSKDFRLVVHLLRT
LQHGGQPDELMLAMSLLTEYVQLFWTTAWPQNPLHKRRFAQQILKRFDSASSSFSQRADEAQRENVQGLLAHLAQVWHSR
EPGLAKEVDALRSRYARPPERVIEAVASDEPLSSNTLAAAMAATPVSPSLAIDNTSDRAWRQTLLKMADLLSEQQPDAAI
GFRLRRHAVWGALTAPPMAQSDGRTPLAAVSADRTADYLARLANADLPLWHQVEQSLTLAPYWLDGHVLSAQIALQLGYD
AVAQAIRDELSVFLARIPALKTLFFTDMTPFLSSESAAWLQQDANHQGRSRTIEQDEIWQCYQQQGLEAALQMINRQPQQ
SEPRDRFYHQLLSAQLFEKAGLTALAQQHYHSLLLVGQQLQLSEWEPALIALLTEKQRQLKP

Specific function: Unknown

COG id: COG3515

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 51934; Mature: 51934

Theoretical pI: Translated: 5.99; Mature: 5.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDITSQHPWHVLLQAPLSPEQTAQALADDDPQWEYIDGQMVKLGSLAHATLNIDDIQQQA
CCCCCCCCCEEEEECCCCHHHHHHHHCCCCCCEEECCCCHHHHCCHHHHCCCHHHHHHHH
MALLSQKSKDFRLVVHLLRTLQHGGQPDELMLAMSLLTEYVQLFWTTAWPQNPLHKRRFA
HHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
QQILKRFDSASSSFSQRADEAQRENVQGLLAHLAQVWHSREPGLAKEVDALRSRYARPPE
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHH
RVIEAVASDEPLSSNTLAAAMAATPVSPSLAIDNTSDRAWRQTLLKMADLLSEQQPDAAI
HHHHHHHCCCCCCCCHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCCHHH
GFRLRRHAVWGALTAPPMAQSDGRTPLAAVSADRTADYLARLANADLPLWHQVEQSLTLA
HHHHHHHHHHHCCCCCCCCCCCCCCCEEHHCCHHHHHHHHHHHCCCCCHHHHHHHCCCCC
PYWLDGHVLSAQIALQLGYDAVAQAIRDELSVFLARIPALKTLFFTDMTPFLSSESAAWL
EEEECCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHH
QQDANHQGRSRTIEQDEIWQCYQQQGLEAALQMINRQPQQSEPRDRFYHQLLSAQLFEKA
HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
GLTALAQQHYHSLLLVGQQLQLSEWEPALIALLTEKQRQLKP
HHHHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDITSQHPWHVLLQAPLSPEQTAQALADDDPQWEYIDGQMVKLGSLAHATLNIDDIQQQA
CCCCCCCCCEEEEECCCCHHHHHHHHCCCCCCEEECCCCHHHHCCHHHHCCCHHHHHHHH
MALLSQKSKDFRLVVHLLRTLQHGGQPDELMLAMSLLTEYVQLFWTTAWPQNPLHKRRFA
HHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
QQILKRFDSASSSFSQRADEAQRENVQGLLAHLAQVWHSREPGLAKEVDALRSRYARPPE
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHH
RVIEAVASDEPLSSNTLAAAMAATPVSPSLAIDNTSDRAWRQTLLKMADLLSEQQPDAAI
HHHHHHHCCCCCCCCHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCCHHH
GFRLRRHAVWGALTAPPMAQSDGRTPLAAVSADRTADYLARLANADLPLWHQVEQSLTLA
HHHHHHHHHHHCCCCCCCCCCCCCCCEEHHCCHHHHHHHHHHHCCCCCHHHHHHHCCCCC
PYWLDGHVLSAQIALQLGYDAVAQAIRDELSVFLARIPALKTLFFTDMTPFLSSESAAWL
EEEECCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHH
QQDANHQGRSRTIEQDEIWQCYQQQGLEAALQMINRQPQQSEPRDRFYHQLLSAQLFEKA
HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
GLTALAQQHYHSLLLVGQQLQLSEWEPALIALLTEKQRQLKP
HHHHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA