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The map label for this gene is ydhC [H]

Identifier: 108813680

GI number: 108813680

Start: 4018258

End: 4018920

Strand: Reverse

Name: ydhC [H]

Synonym: YPN_3520

Alternate gene names: 108813680

Gene position: 4018920-4018258 (Counterclockwise)

Preceding gene: 108813681

Following gene: 108813679

Centisome position: 88.63

GC content: 52.19

Gene sequence:

>663_bases
ATGCTAGCGGGAATGGGTGTGATTAAACCTGAGACCTTGCGCTATCAGGTTGAAAATGTACTGCGGCAAGCGATCATGTC
AGGGCGTTTTACACCAGGGGAGCGGCTGATTGAACGAGAACTGTGTGAAACCTTAGGCGTCAGCCGGACATCAATTCGTG
AAGCTTTACGTAGGCTTGAAGCTGAAAAACTGGTCTCCATTGTGCCGCACAAAGGCCCGATAGTGGCGATTATCTCCAGG
CAAGAAGCTGCTGAGTTATTCGCCCTGCGCGGTCTCTTGGAGGGGTTCGCCGCCCGTGAATTTGCCCAACGGGCAACGGA
TGTAGCGATTGTGCATTTCGCACAAGCTATTCAGGCGCTGCGCATGGCAGGCATGACAAAGGATCGGGCCAAGGTACTGA
AGGCGAAAACAGATCTTTATGACGTGTTGCTGGACAATTGTGGCAATGGGTTGGTGAAAGAGACCTTAACCAGCTTACAT
TCGCGGATTAACTTATTGCGCGCGACTTCGCTAATGGATCCGCAGCGTTTACCTGTCAGCATTAATGAGATCGACGATCT
GTATCAGGCGTTAAAAGCGCGGGATCCCGATGCGGCAGAACGGCATGTCGCCAATGCAAAAGAAGTTGCTCTGCGGATCC
TTGAGGAGACCAACGCGACGTAG

Upstream 100 bases:

>100_bases
CAGCGGGCTAACGGGGTGATTATCACCGGGTCTTTTCTTGTTTTGTATTACAGAGGCATGGTACAAAAAGCAACCATATT
GTCGGACAGGAATACAATTA

Downstream 100 bases:

>100_bases
GCAATAAAGACATAGGCAATCCTTTTGCCGATACCTAACGGGAAAATCTATCCATAGCGGTCAGCATGAATACTGAAAAC
AAAAAACTTAGCACGTTAAT

Product: GntR family transcriptional regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MLAGMGVIKPETLRYQVENVLRQAIMSGRFTPGERLIERELCETLGVSRTSIREALRRLEAEKLVSIVPHKGPIVAIISR
QEAAELFALRGLLEGFAAREFAQRATDVAIVHFAQAIQALRMAGMTKDRAKVLKAKTDLYDVLLDNCGNGLVKETLTSLH
SRINLLRATSLMDPQRLPVSINEIDDLYQALKARDPDAAERHVANAKEVALRILEETNAT

Sequences:

>Translated_220_residues
MLAGMGVIKPETLRYQVENVLRQAIMSGRFTPGERLIERELCETLGVSRTSIREALRRLEAEKLVSIVPHKGPIVAIISR
QEAAELFALRGLLEGFAAREFAQRATDVAIVHFAQAIQALRMAGMTKDRAKVLKAKTDLYDVLLDNCGNGLVKETLTSLH
SRINLLRATSLMDPQRLPVSINEIDDLYQALKARDPDAAERHVANAKEVALRILEETNAT
>Mature_220_residues
MLAGMGVIKPETLRYQVENVLRQAIMSGRFTPGERLIERELCETLGVSRTSIREALRRLEAEKLVSIVPHKGPIVAIISR
QEAAELFALRGLLEGFAAREFAQRATDVAIVHFAQAIQALRMAGMTKDRAKVLKAKTDLYDVLLDNCGNGLVKETLTSLH
SRINLLRATSLMDPQRLPVSINEIDDLYQALKARDPDAAERHVANAKEVALRILEETNAT

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI48994955, Length=206, Percent_Identity=26.6990291262136, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI87081914, Length=215, Percent_Identity=25.5813953488372, Blast_Score=61, Evalue=7e-11,
Organism=Escherichia coli, GI1787821, Length=207, Percent_Identity=25.1207729468599, Blast_Score=60, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 24423; Mature: 24423

Theoretical pI: Translated: 8.72; Mature: 8.72

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAGMGVIKPETLRYQVENVLRQAIMSGRFTPGERLIERELCETLGVSRTSIREALRRLE
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
AEKLVSIVPHKGPIVAIISRQEAAELFALRGLLEGFAAREFAQRATDVAIVHFAQAIQAL
HHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RMAGMTKDRAKVLKAKTDLYDVLLDNCGNGLVKETLTSLHSRINLLRATSLMDPQRLPVS
HHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
INEIDDLYQALKARDPDAAERHVANAKEVALRILEETNAT
HHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLAGMGVIKPETLRYQVENVLRQAIMSGRFTPGERLIERELCETLGVSRTSIREALRRLE
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
AEKLVSIVPHKGPIVAIISRQEAAELFALRGLLEGFAAREFAQRATDVAIVHFAQAIQAL
HHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RMAGMTKDRAKVLKAKTDLYDVLLDNCGNGLVKETLTSLHSRINLLRATSLMDPQRLPVS
HHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
INEIDDLYQALKARDPDAAERHVANAKEVALRILEETNAT
HHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]