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The map label for this gene is ssaQ [H]

Identifier: 108813558

GI number: 108813558

Start: 3874377

End: 3875339

Strand: Reverse

Name: ssaQ [H]

Synonym: YPN_3398

Alternate gene names: 108813558

Gene position: 3875339-3874377 (Counterclockwise)

Preceding gene: 108813559

Following gene: 108813557

Centisome position: 85.46

GC content: 54.62

Gene sequence:

>963_bases
GTGCTGACGAATCTGACGCCTGAGTTACGCGCCCTTAGCACCTTGATCGGGAGTGGCCGGCAGACAGCAGGGGTGTCGGT
GGCCTTGACGGAGATTGACGGTGAGGGCGTTTATCTGCCACTGCATTATGGCGGCCAAGAGTGTGGGTTGTGGTTATCAC
AATCCTGTTGGCAGCACTGGCTGAACACGACGTTGGCAACCGATAACCCCCAGTTGTTGGCCGCAGAGTTAGTGATCGCC
ATGGCTAATTGGGCCGTCACCCCATTGTTAGCGCTGTTTACCGATCTGGTGGTATTGGCCGAGTCACCACAGAAGAGGTC
ACTACCAAAGCAGTGGGCGGTGACGGTGGCTTTCGAGCTGGAGGGACAGCCGATTATCGGTGTGTTACAGGATTGGCCGC
AGGCGGCATTGGCCGACACTTTGTCTCATTGGCCGTGCGAAGCGGTCACCGCCCCTGATTTGCTTTGGCAATCTGGATTG
GTGGCGGGTTGGTGCCACTTATCATTGCGTCAATTACAGCAGTTAAGGCCGGGCGAGGGTTTACGCCTCTCTATGGCGGC
GGAATTGGATAAAGAAGCGTGCTGGTTATGGCATCACGCATCGCCACAAATTTATATCAAGCTAGAGGGTGGGAACAGAA
TGACAATTCAACAGATTAATGAAGCGAGTGACCCGCTGGCCTGCGGCAGTCGCGCTGAATCACCGCCTCTGGCGGCGGTA
CAACTTGAGGATTTACCGCAAACGCTGGTGATGGAAATTGGCCGTTTGACCTTGCCTCTGGGGGAGATAAAACAACTCGC
GGTTGGTCAGACGCTGGCGTGCCAAACCCACTGTTATGGCGAGGTGAATATCTGCCTGAATGGGCAATCCGTTGGCCGTG
GCAGTTTACTCCGGTGCGATGAAAAACTGGTGGTCAGAATTGCACAATGGGGATTACAAAACGGCGAAAATATCATGGAA
TGA

Upstream 100 bases:

>100_bases
AATACAGAGAGCAAACTGATTGAACGCTTACAGCGCATACAAAACCGCTGGCAGCGGCAACTGCATCAGTTAGGGTTCCC
GTGTTTACTGGAGGTCACCT

Downstream 100 bases:

>100_bases
CAAGATTGAGGTGAACACCCGATACCCCTGAAAGGGGCGGGGGACAAGACTGTCCATCTTGTTTTTATGCGAAACAGCTT
ACTTTTTATCTTATCTGAAA

Product: type III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MLTNLTPELRALSTLIGSGRQTAGVSVALTEIDGEGVYLPLHYGGQECGLWLSQSCWQHWLNTTLATDNPQLLAAELVIA
MANWAVTPLLALFTDLVVLAESPQKRSLPKQWAVTVAFELEGQPIIGVLQDWPQAALADTLSHWPCEAVTAPDLLWQSGL
VAGWCHLSLRQLQQLRPGEGLRLSMAAELDKEACWLWHHASPQIYIKLEGGNRMTIQQINEASDPLACGSRAESPPLAAV
QLEDLPQTLVMEIGRLTLPLGEIKQLAVGQTLACQTHCYGEVNICLNGQSVGRGSLLRCDEKLVVRIAQWGLQNGENIME

Sequences:

>Translated_320_residues
MLTNLTPELRALSTLIGSGRQTAGVSVALTEIDGEGVYLPLHYGGQECGLWLSQSCWQHWLNTTLATDNPQLLAAELVIA
MANWAVTPLLALFTDLVVLAESPQKRSLPKQWAVTVAFELEGQPIIGVLQDWPQAALADTLSHWPCEAVTAPDLLWQSGL
VAGWCHLSLRQLQQLRPGEGLRLSMAAELDKEACWLWHHASPQIYIKLEGGNRMTIQQINEASDPLACGSRAESPPLAAV
QLEDLPQTLVMEIGRLTLPLGEIKQLAVGQTLACQTHCYGEVNICLNGQSVGRGSLLRCDEKLVVRIAQWGLQNGENIME
>Mature_320_residues
MLTNLTPELRALSTLIGSGRQTAGVSVALTEIDGEGVYLPLHYGGQECGLWLSQSCWQHWLNTTLATDNPQLLAAELVIA
MANWAVTPLLALFTDLVVLAESPQKRSLPKQWAVTVAFELEGQPIIGVLQDWPQAALADTLSHWPCEAVTAPDLLWQSGL
VAGWCHLSLRQLQQLRPGEGLRLSMAAELDKEACWLWHHASPQIYIKLEGGNRMTIQQINEASDPLACGSRAESPPLAAV
QLEDLPQTLVMEIGRLTLPLGEIKQLAVGQTLACQTHCYGEVNICLNGQSVGRGSLLRCDEKLVVRIAQWGLQNGENIME

Specific function: Part of a type III secretion system [H]

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001172
- InterPro:   IPR001543
- InterPro:   IPR013385 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 34948; Mature: 34948

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTNLTPELRALSTLIGSGRQTAGVSVALTEIDGEGVYLPLHYGGQECGLWLSQSCWQHW
CCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHH
LNTTLATDNPQLLAAELVIAMANWAVTPLLALFTDLVVLAESPQKRSLPKQWAVTVAFEL
HCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCEEEEEEEEE
EGQPIIGVLQDWPQAALADTLSHWPCEAVTAPDLLWQSGLVAGWCHLSLRQLQQLRPGEG
CCCCEEEHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHCCCCCC
LRLSMAAELDKEACWLWHHASPQIYIKLEGGNRMTIQQINEASDPLACGSRAESPPLAAV
EEEEHHHHCCCCCEEEEECCCCEEEEEECCCCEEEHEECCCCCCCCCCCCCCCCCCEEEE
QLEDLPQTLVMEIGRLTLPLGEIKQLAVGQTLACQTHCYGEVNICLNGQSVGRGSLLRCD
EHHHCHHHHHHHHHHHCCCHHHHHHHHCCCEEEEEEECCEEEEEEECCCCCCCCCEEECC
EKLVVRIAQWGLQNGENIME
HHHHHHHHHHCCCCCCHHCC
>Mature Secondary Structure
MLTNLTPELRALSTLIGSGRQTAGVSVALTEIDGEGVYLPLHYGGQECGLWLSQSCWQHW
CCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHH
LNTTLATDNPQLLAAELVIAMANWAVTPLLALFTDLVVLAESPQKRSLPKQWAVTVAFEL
HCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCEEEEEEEEE
EGQPIIGVLQDWPQAALADTLSHWPCEAVTAPDLLWQSGLVAGWCHLSLRQLQQLRPGEG
CCCCEEEHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHCCCCCC
LRLSMAAELDKEACWLWHHASPQIYIKLEGGNRMTIQQINEASDPLACGSRAESPPLAAV
EEEEHHHHCCCCCEEEEECCCCEEEEEECCCCEEEHEECCCCCCCCCCCCCCCCCCEEEE
QLEDLPQTLVMEIGRLTLPLGEIKQLAVGQTLACQTHCYGEVNICLNGQSVGRGSLLRCD
EHHHCHHHHHHHHHHHCCCHHHHHHHHCCCEEEEEEECCEEEEEEECCCCCCCCCEEECC
EKLVVRIAQWGLQNGENIME
HHHHHHHHHHCCCCCCHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677609; 9140973; 9023191 [H]