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The map label for this gene is ssaU [H]

Identifier: 108813554

GI number: 108813554

Start: 3871457

End: 3872524

Strand: Reverse

Name: ssaU [H]

Synonym: YPN_3394

Alternate gene names: 108813554

Gene position: 3872524-3871457 (Counterclockwise)

Preceding gene: 108813555

Following gene: 108813553

Centisome position: 85.4

GC content: 48.97

Gene sequence:

>1068_bases
ATGTCCACTGAAAAGAATGAAAAACCCACGCCCAAGCGCCTTAAGGAAGCCAAAGAAAAAGGGCAGGTAGTCAAAAGTGT
TGAGATAACCTCCGGCGTACAGTTGGTGGCGCTGGTTATCTACTTTTTACTGACAGGATATAGCTTGGTCGAGCAGGCTA
AAGCCCTTATCCGCAGTTCAATCATACAATTACAGCAACCACTTACTCTGGCTTTAGCCCGTATCGGTGCCGAGTGCATG
ACGGTATTGATGCATATCGTGGTGGTCTTGGGCGGGGCGCTGATCGTGGTCACCATTATTGCCGGTATTGCTCAGGTTGG
GCCGTTGTTGGCGACCAAAGCGGTGTCGTTTAAAGGTGAGCGAATTAACCCCATTCAAAATGCTAAACAACTTTTCTCAT
TGCGCAGCGTGTTTGAGCTGATGAAATCATTATTGAAAGTGGGGGTGCTAACGCTGATTTTTGGTTACTTATTGATGCAG
TATGCGCCCTCTTTTGGTTATTTGACCCACTGTGGCAGTCGCTGTGCTCTCCCGGTATTCTCGACATTAATGGGGTGGTT
ATTAGGCTCACTGATTGCCTGCTATCTGGTTTTTTCACTGATGGATTATGCTTTTCAGCGCTACACCATCATGAAACAAC
TGAAAATGTCCCATGATGAGGTCAAGCGGGAGTATAAAGACAGTAATGGGGATCCGCACATTAAGCAGAAGCGGCGGCAG
CTACAGCATGAAGTACAAAGCGGTAGTTTTGCCACTAACGTGCGCCGTTCCACCGCGGTAGTCCGTAACCCGACACATTT
TGCCGTTTGTCTGATTTATCACCCAGAAGAGACGCCGCTACCGATAGTGATTGAAAAAGGTCATGACGAGCAGGCTGCAT
TGATTGTGAGCCTCGCAGAGCAGAGCGGTATCCCTGTGGTAGAAAACATTGCGCTGGCGCGCGCATTACACCGTGATGTT
GCTTGTGGTGACACCATCCCGGAACAATTCTTCGAGCCAGTTGCTGCGCTCTTACGTATGGCACTGGAGTTGGATTATCA
GCCATCAAGTGATGATCCACCGCGCTAG

Upstream 100 bases:

>100_bases
CTGATCAGCCTGCCTTATGGCCTGCATCACTACCTGTCCCGTATGAGCGATACTGAACAGAAGATTGGTACGTTGATCCC
GTTGATTAAAGGGGGGAATG

Downstream 100 bases:

>100_bases
CTGACCCCCGATATACCCCGTGATTCAATGATATTGGCTATTTCAACCCAATATTTGAATAATATCTAAATTATGTAATA
TCGATCTTTATTATGTGAAT

Product: secretion system apparatus protein SsaU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 355; Mature: 354

Protein sequence:

>355_residues
MSTEKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTGYSLVEQAKALIRSSIIQLQQPLTLALARIGAECM
TVLMHIVVVLGGALIVVTIIAGIAQVGPLLATKAVSFKGERINPIQNAKQLFSLRSVFELMKSLLKVGVLTLIFGYLLMQ
YAPSFGYLTHCGSRCALPVFSTLMGWLLGSLIACYLVFSLMDYAFQRYTIMKQLKMSHDEVKREYKDSNGDPHIKQKRRQ
LQHEVQSGSFATNVRRSTAVVRNPTHFAVCLIYHPEETPLPIVIEKGHDEQAALIVSLAEQSGIPVVENIALARALHRDV
ACGDTIPEQFFEPVAALLRMALELDYQPSSDDPPR

Sequences:

>Translated_355_residues
MSTEKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTGYSLVEQAKALIRSSIIQLQQPLTLALARIGAECM
TVLMHIVVVLGGALIVVTIIAGIAQVGPLLATKAVSFKGERINPIQNAKQLFSLRSVFELMKSLLKVGVLTLIFGYLLMQ
YAPSFGYLTHCGSRCALPVFSTLMGWLLGSLIACYLVFSLMDYAFQRYTIMKQLKMSHDEVKREYKDSNGDPHIKQKRRQ
LQHEVQSGSFATNVRRSTAVVRNPTHFAVCLIYHPEETPLPIVIEKGHDEQAALIVSLAEQSGIPVVENIALARALHRDV
ACGDTIPEQFFEPVAALLRMALELDYQPSSDDPPR
>Mature_354_residues
STEKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTGYSLVEQAKALIRSSIIQLQQPLTLALARIGAECMT
VLMHIVVVLGGALIVVTIIAGIAQVGPLLATKAVSFKGERINPIQNAKQLFSLRSVFELMKSLLKVGVLTLIFGYLLMQY
APSFGYLTHCGSRCALPVFSTLMGWLLGSLIACYLVFSLMDYAFQRYTIMKQLKMSHDEVKREYKDSNGDPHIKQKRRQL
QHEVQSGSFATNVRRSTAVVRNPTHFAVCLIYHPEETPLPIVIEKGHDEQAALIVSLAEQSGIPVVENIALARALHRDVA
CGDTIPEQFFEPVAALLRMALELDYQPSSDDPPR

Specific function: Part of a type III secretion system [H]

COG id: COG4792

COG function: function code U; Type III secretory pathway, component EscU

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the type III secretion exporter family [H]

Homologues:

Organism=Escherichia coli, GI1788188, Length=351, Percent_Identity=28.7749287749288, Blast_Score=144, Evalue=6e-36,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006135
- InterPro:   IPR006307 [H]

Pfam domain/function: PF01312 Bac_export_2 [H]

EC number: NA

Molecular weight: Translated: 39331; Mature: 39200

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTEKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTGYSLVEQAKALIRSS
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIQLQQPLTLALARIGAECMTVLMHIVVVLGGALIVVTIIAGIAQVGPLLATKAVSFKGE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RINPIQNAKQLFSLRSVFELMKSLLKVGVLTLIFGYLLMQYAPSFGYLTHCGSRCALPVF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHH
STLMGWLLGSLIACYLVFSLMDYAFQRYTIMKQLKMSHDEVKREYKDSNGDPHIKQKRRQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHH
LQHEVQSGSFATNVRRSTAVVRNPTHFAVCLIYHPEETPLPIVIEKGHDEQAALIVSLAE
HHHHHHCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEEECCCCHHHHHHHHHHH
QSGIPVVENIALARALHRDVACGDTIPEQFFEPVAALLRMALELDYQPSSDDPPR
HCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
STEKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTGYSLVEQAKALIRSS
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIQLQQPLTLALARIGAECMTVLMHIVVVLGGALIVVTIIAGIAQVGPLLATKAVSFKGE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RINPIQNAKQLFSLRSVFELMKSLLKVGVLTLIFGYLLMQYAPSFGYLTHCGSRCALPVF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHH
STLMGWLLGSLIACYLVFSLMDYAFQRYTIMKQLKMSHDEVKREYKDSNGDPHIKQKRRQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHH
LQHEVQSGSFATNVRRSTAVVRNPTHFAVCLIYHPEETPLPIVIEKGHDEQAALIVSLAE
HHHHHHCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEEECCCCHHHHHHHHHHH
QSGIPVVENIALARALHRDVACGDTIPEQFFEPVAALLRMALELDYQPSSDDPPR
HCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9140973; 11677609 [H]