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The map label for this gene is ydeU [H]

Identifier: 108813365

GI number: 108813365

Start: 3623193

End: 3625193

Strand: Reverse

Name: ydeU [H]

Synonym: YPN_3205

Alternate gene names: 108813365

Gene position: 3625193-3623193 (Counterclockwise)

Preceding gene: 108813366

Following gene: 108813364

Centisome position: 79.95

GC content: 58.72

Gene sequence:

>2001_bases
GTGGGCGGCTTGGTGCACGGCGGCAACGGTACCGCAATTGGCATTCATCGGCTCGAAAATGTTCAAACATCGGCCACGTT
AGAGCTGCAATCTGGCTATGCCCTTGAAGGCGTTACACAGGCACTGGTCTTCACTGGCAGTTATGCGGAGATCAATGATG
CCGCGTTGGATCTGGCAAATAGCCATCTGGTGCTGGGCGGAACAGGAGATGCTGTTTTCGATCTCACGCGTATTGATAAC
CGTGAAGAGGCCATTCTGGATGGCGACCCGAACCGGATCACCGGCTTCGGTACCCTGACCAAAACCAACAACAGCATCTG
GACGTTAACCGGCGCCAATATGGCCGACGGTGACGCCAATGCCTTCCTGTCGGCCAATATCGCCGGGGGGATTTTGGTGC
TGGATAACGCCACGTTGGGCCTGACGCCTGCCACCACCATATTAAATCGCCTCAGTGCCGCCGATATCGCCGCTGACCCG
ACGCTAGTGGCTACCGAAACCGGTGCATTAACCCTGGCTGAAGGCGGTGCGCTGTCCTCACTCGGTGACTCGGTCCTGAG
CGGTAACCTCATCAGCGCCGGTGGGATCCTGCTGTCAAACACCTATACCGGCGGCAATGGTGCCGCTACCGACGATCGGC
TGACCGTGACCGGGACTTATTTGGGTGAAAATAACGGTTCCGGTGAAGGTGCCTGGCTGGCCCTCGATACGGTGCTGGGG
GATGACGATTCTGCCACCGACCGGTTAGTGATCAACGGCGATGCCACCGGCACCACCTCGGTTCGGGTGAACAATGCGGG
CGGTCTGGGCGATAAAACCCTCAATGGCATCAATCTGATCACCGTGGACGGTCTGGCACAGGATGACACCTTCCTGCTGG
CCGGGGACTATGTCACCACGGATGGCTATCAGGCGGTGGTGGCCGGGGCGTATGCCTACACCTTACAGGCCGACGGGGAA
GCCGCCACTGCGGGGCGCAACTGGTATCTCTCTTCAGAACTGATGCTAACCGAGGGGGTACGCTATCAGGTGGGCGTGCC
GCTGTATGAACAATATCCGCAGGTGCTGGCCGCCCTGAACACCCTGCCGACGCTGCAACAGCGTGTCGGTAACCGTTACG
GGGCACCGGGCGCACTGGCAGACCTGAATTTTGACGATAATCAATGGGCCTGGGGCCGTATTGAAGGGAGCCACCAGGTC
ACCGACCCGGCCCGATCCACCAGCGGTTCACAGCGTGAGATTGATGTGTGGAAGTTGCAGACCGGCATTGATGTGCCGTT
GTATCAGAGCCAGGGCGGTTCACTGCTGACCGGCGGGGTGAACTTCACCTACGGAAAAGCCAAAGCGGATATCCACTCAT
TCTTTGGTGATGGCCGCATCAACAGCGCAGGTTACGGTCTTGGCACCAGCCTGACCTGGTATGGCAATAACGGCGTGTAT
GTGGATGGCCAGTTGCAGACGATGTGGTTTGACAGCGACCTGAGCTCCCGTACCGCAGGGCATGCAGTGGCCAGCGGTAA
CAATGGTCGCGGGTATACCTCGGCGATAGAAGCCGGTAAAGGTTACGCACTGGGTAACGGGTTGTCACTGACCCCGCAGA
TGCAGGTGACCTACTCGCGGGTCGATTTCGATACCTTCCGCGATCCGTTTGATAGCGAAGTCTCGCTACAAGAGGGTGAC
AGCCTGCGGGGCCGCATCGGTGTCTCACTGGATAAGGAAACGACCTGGAGTGCGAAAGACGGCACCACCCGCCGCTCACA
CATTTACAGTCATCTCGATCTGCACAATGAGTTCCTTAACGGCAGTAAAGTGCAGGTCTCGGGGGTGGAGTTCGCCACCC
GGGATGAGCGTCAGTCGGTGGGGTTAGGCGCGGGCGGTACGTATGAATGGCAGAATGGTCGCTACGCGGTTTACGGCAAT
GTCAATCTGCTGGGGGCTACGCGGAATGTCAGTGACAATTATGCCGTCGGCGGCACGATAGGCGCACGGGTGAGCTGGTA
A

Upstream 100 bases:

>100_bases
CGGCACATCGACCATTGATCTGATCACCCGGGGCGCGCTGGTTTCGCAGCAGGGCTACGGGATTAATATTGAAACCAATA
CCGCAGACACCTATGTCACC

Downstream 100 bases:

>100_bases
GTCGTTTTTATGCGTAAAGGGTATCAGTATGCAGTGAGGGTACTGATACCTTTATTCAGGGGAGAATTTCAACATCCTGG
AGAATATTCTACTTATCAGC

Product: Outer membrane autotransporter barrel

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 666; Mature: 665

Protein sequence:

>666_residues
MGGLVHGGNGTAIGIHRLENVQTSATLELQSGYALEGVTQALVFTGSYAEINDAALDLANSHLVLGGTGDAVFDLTRIDN
REEAILDGDPNRITGFGTLTKTNNSIWTLTGANMADGDANAFLSANIAGGILVLDNATLGLTPATTILNRLSAADIAADP
TLVATETGALTLAEGGALSSLGDSVLSGNLISAGGILLSNTYTGGNGAATDDRLTVTGTYLGENNGSGEGAWLALDTVLG
DDDSATDRLVINGDATGTTSVRVNNAGGLGDKTLNGINLITVDGLAQDDTFLLAGDYVTTDGYQAVVAGAYAYTLQADGE
AATAGRNWYLSSELMLTEGVRYQVGVPLYEQYPQVLAALNTLPTLQQRVGNRYGAPGALADLNFDDNQWAWGRIEGSHQV
TDPARSTSGSQREIDVWKLQTGIDVPLYQSQGGSLLTGGVNFTYGKAKADIHSFFGDGRINSAGYGLGTSLTWYGNNGVY
VDGQLQTMWFDSDLSSRTAGHAVASGNNGRGYTSAIEAGKGYALGNGLSLTPQMQVTYSRVDFDTFRDPFDSEVSLQEGD
SLRGRIGVSLDKETTWSAKDGTTRRSHIYSHLDLHNEFLNGSKVQVSGVEFATRDERQSVGLGAGGTYEWQNGRYAVYGN
VNLLGATRNVSDNYAVGGTIGARVSW

Sequences:

>Translated_666_residues
MGGLVHGGNGTAIGIHRLENVQTSATLELQSGYALEGVTQALVFTGSYAEINDAALDLANSHLVLGGTGDAVFDLTRIDN
REEAILDGDPNRITGFGTLTKTNNSIWTLTGANMADGDANAFLSANIAGGILVLDNATLGLTPATTILNRLSAADIAADP
TLVATETGALTLAEGGALSSLGDSVLSGNLISAGGILLSNTYTGGNGAATDDRLTVTGTYLGENNGSGEGAWLALDTVLG
DDDSATDRLVINGDATGTTSVRVNNAGGLGDKTLNGINLITVDGLAQDDTFLLAGDYVTTDGYQAVVAGAYAYTLQADGE
AATAGRNWYLSSELMLTEGVRYQVGVPLYEQYPQVLAALNTLPTLQQRVGNRYGAPGALADLNFDDNQWAWGRIEGSHQV
TDPARSTSGSQREIDVWKLQTGIDVPLYQSQGGSLLTGGVNFTYGKAKADIHSFFGDGRINSAGYGLGTSLTWYGNNGVY
VDGQLQTMWFDSDLSSRTAGHAVASGNNGRGYTSAIEAGKGYALGNGLSLTPQMQVTYSRVDFDTFRDPFDSEVSLQEGD
SLRGRIGVSLDKETTWSAKDGTTRRSHIYSHLDLHNEFLNGSKVQVSGVEFATRDERQSVGLGAGGTYEWQNGRYAVYGN
VNLLGATRNVSDNYAVGGTIGARVSW
>Mature_665_residues
GGLVHGGNGTAIGIHRLENVQTSATLELQSGYALEGVTQALVFTGSYAEINDAALDLANSHLVLGGTGDAVFDLTRIDNR
EEAILDGDPNRITGFGTLTKTNNSIWTLTGANMADGDANAFLSANIAGGILVLDNATLGLTPATTILNRLSAADIAADPT
LVATETGALTLAEGGALSSLGDSVLSGNLISAGGILLSNTYTGGNGAATDDRLTVTGTYLGENNGSGEGAWLALDTVLGD
DDSATDRLVINGDATGTTSVRVNNAGGLGDKTLNGINLITVDGLAQDDTFLLAGDYVTTDGYQAVVAGAYAYTLQADGEA
ATAGRNWYLSSELMLTEGVRYQVGVPLYEQYPQVLAALNTLPTLQQRVGNRYGAPGALADLNFDDNQWAWGRIEGSHQVT
DPARSTSGSQREIDVWKLQTGIDVPLYQSQGGSLLTGGVNFTYGKAKADIHSFFGDGRINSAGYGLGTSLTWYGNNGVYV
DGQLQTMWFDSDLSSRTAGHAVASGNNGRGYTSAIEAGKGYALGNGLSLTPQMQVTYSRVDFDTFRDPFDSEVSLQEGDS
LRGRIGVSLDKETTWSAKDGTTRRSHIYSHLDLHNEFLNGSKVQVSGVEFATRDERQSVGLGAGGTYEWQNGRYAVYGNV
NLLGATRNVSDNYAVGGTIGARVSW

Specific function: Unknown

COG id: COG3468

COG function: function code MU; Type V secretory pathway, adhesin AidA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 autotransporter (TC 1.B.12) domain [H]

Homologues:

Organism=Escherichia coli, GI1788565, Length=262, Percent_Identity=33.587786259542, Blast_Score=70, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005546
- InterPro:   IPR006315
- InterPro:   IPR012332
- InterPro:   IPR011050
- InterPro:   IPR004899 [H]

Pfam domain/function: PF03797 Autotransporter; PF03212 Pertactin [H]

EC number: NA

Molecular weight: Translated: 69745; Mature: 69614

Theoretical pI: Translated: 4.23; Mature: 4.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGGLVHGGNGTAIGIHRLENVQTSATLELQSGYALEGVTQALVFTGSYAEINDAALDLAN
CCCEEECCCCCEEEEEEECCCCCEEEEEECCCCCHHCCEEEEEEECCCCCCCHHHEEECC
SHLVLGGTGDAVFDLTRIDNREEAILDGDPNRITGFGTLTKTNNSIWTLTGANMADGDAN
CEEEEECCCCCEEEEEECCCCCCEEECCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCC
AFLSANIAGGILVLDNATLGLTPATTILNRLSAADIAADPTLVATETGALTLAEGGALSS
EEEEEECCCCEEEEECCEECCCHHHHHHHHHHHHHCCCCCEEEEECCCEEEEECCCCHHH
LGDSVLSGNLISAGGILLSNTYTGGNGAATDDRLTVTGTYLGENNGSGEGAWLALDTVLG
HCHHHHCCCEEECCCEEEEEEEECCCCCCCCCEEEEEEEEEECCCCCCCEEEEEEEEEEC
DDDSATDRLVINGDATGTTSVRVNNAGGLGDKTLNGINLITVDGLAQDDTFLLAGDYVTT
CCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCEEEEECCEEEC
DGYQAVVAGAYAYTLQADGEAATAGRNWYLSSELMLTEGVRYQVGVPLYEQYPQVLAALN
CCCEEEEEEEEEEEEEECCCEECCCCCEEEECCEEEECCCEEEECCCHHHHHHHHHHHHH
TLPTLQQRVGNRYGAPGALADLNFDDNQWAWGRIEGSHQVTDPARSTSGSQREIDVWKLQ
CCHHHHHHHCCCCCCCCCEEECCCCCCCEEEEEECCCCCCCCCHHCCCCCCCEEEEEEEE
TGIDVPLYQSQGGSLLTGGVNFTYGKAKADIHSFFGDGRINSAGYGLGTSLTWYGNNGVY
CCCCCEEEECCCCEEEECCEEEEECCCHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCEE
VDGQLQTMWFDSDLSSRTAGHAVASGNNGRGYTSAIEAGKGYALGNGLSLTPQMQVTYSR
ECCEEEEEEECCCCCCCCCCCEEECCCCCCCCHHHHHCCCCEEECCCCCCCCEEEEEEEE
VDFDTFRDPFDSEVSLQEGDSLRGRIGVSLDKETTWSAKDGTTRRSHIYSHLDLHNEFLN
ECHHHHCCCCCCCEEECCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
GSKVQVSGVEFATRDERQSVGLGAGGTYEWQNGRYAVYGNVNLLGATRNVSDNYAVGGTI
CCEEEEECCEEECCCCHHHCCCCCCCEEEECCCCEEEEECEEEEEEECCCCCCEEECCCC
GARVSW
CEEECC
>Mature Secondary Structure 
GGLVHGGNGTAIGIHRLENVQTSATLELQSGYALEGVTQALVFTGSYAEINDAALDLAN
CCEEECCCCCEEEEEEECCCCCEEEEEECCCCCHHCCEEEEEEECCCCCCCHHHEEECC
SHLVLGGTGDAVFDLTRIDNREEAILDGDPNRITGFGTLTKTNNSIWTLTGANMADGDAN
CEEEEECCCCCEEEEEECCCCCCEEECCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCC
AFLSANIAGGILVLDNATLGLTPATTILNRLSAADIAADPTLVATETGALTLAEGGALSS
EEEEEECCCCEEEEECCEECCCHHHHHHHHHHHHHCCCCCEEEEECCCEEEEECCCCHHH
LGDSVLSGNLISAGGILLSNTYTGGNGAATDDRLTVTGTYLGENNGSGEGAWLALDTVLG
HCHHHHCCCEEECCCEEEEEEEECCCCCCCCCEEEEEEEEEECCCCCCCEEEEEEEEEEC
DDDSATDRLVINGDATGTTSVRVNNAGGLGDKTLNGINLITVDGLAQDDTFLLAGDYVTT
CCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCEEEEECCEEEC
DGYQAVVAGAYAYTLQADGEAATAGRNWYLSSELMLTEGVRYQVGVPLYEQYPQVLAALN
CCCEEEEEEEEEEEEEECCCEECCCCCEEEECCEEEECCCEEEECCCHHHHHHHHHHHHH
TLPTLQQRVGNRYGAPGALADLNFDDNQWAWGRIEGSHQVTDPARSTSGSQREIDVWKLQ
CCHHHHHHHCCCCCCCCCEEECCCCCCCEEEEEECCCCCCCCCHHCCCCCCCEEEEEEEE
TGIDVPLYQSQGGSLLTGGVNFTYGKAKADIHSFFGDGRINSAGYGLGTSLTWYGNNGVY
CCCCCEEEECCCCEEEECCEEEEECCCHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCEE
VDGQLQTMWFDSDLSSRTAGHAVASGNNGRGYTSAIEAGKGYALGNGLSLTPQMQVTYSR
ECCEEEEEEECCCCCCCCCCCEEECCCCCCCCHHHHHCCCCEEECCCCCCCCEEEEEEEE
VDFDTFRDPFDSEVSLQEGDSLRGRIGVSLDKETTWSAKDGTTRRSHIYSHLDLHNEFLN
ECHHHHCCCCCCCEEECCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
GSKVQVSGVEFATRDERQSVGLGAGGTYEWQNGRYAVYGNVNLLGATRNVSDNYAVGGTI
CCEEEEECCEEECCCCHHHCCCCCCCEEEECCCCEEEEECEEEEEEECCCCCCEEECCCC
GARVSW
CEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]