| Definition | Yersinia pestis Nepal516, complete genome. |
|---|---|
| Accession | NC_008149 |
| Length | 4,534,590 |
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The map label for this gene is 108813356
Identifier: 108813356
GI number: 108813356
Start: 3604738
End: 3605913
Strand: Reverse
Name: 108813356
Synonym: YPN_3196
Alternate gene names: NA
Gene position: 3605913-3604738 (Counterclockwise)
Preceding gene: 108813359
Following gene: 108813353
Centisome position: 79.52
GC content: 45.92
Gene sequence:
>1176_bases ATGAGAATAATTATGAGCAAATGGTCTGAAGAAAAGTCATGGGAATGGCATAAACAGCAGGGGTGGTTGCGTGGTTTTAA CTATTTACCGCGTACCGCCGTCAACTGGACTGAAATGTGGCAACAGGATACGTTCGATCCGGCTTGTATGACTCAAGAGC TGCAATGGGCTGCTGAGGCAGGGTACAACACACTGCGGACCAATTTGCCCTTTGTTGTCTGGCAGCATGATCCTGATGGA TTAATGACTAGAGTTGAGCATTTTCTCGATATTTGCCAACGTGTTGACATCAAAGTGATGTTAACGCTAATGGATGATTG TGGCTTTTCTGGTGACCATCCTTTTATCGGGCAACAAAAACAACCTATTCCCGGTTTGCATAATAGTCAGGCTGCCGCCA GCCCTGGTCGCAATGTGGTCATGCAGCCTTATTTATGGGGACAGGTTGAACGGTATCTCAAAGAGATTATTGGTCATTTC GCTCACGATGAACGGATCGTGATATGGGATCTCTACAACGAGCCAACCAACCGTATGATTTTCACCTTAGCGGGTGAAGA CGCTTTTGATCCGGCGCTGGAAGAATATAGCCACCAGTTAATGGAAAAAGCGTTTATGTGGGCACGGGAGGTCAACCCGA CACAGCCACTCACGGTGGGCGCGTGGCATATTGCTAATATTCTGGATCTCGGTGCACCTATTTATCAGCATCCGACGGAT ATACGTGCCTTGGAATTATCGGATATCATCTCCTTCCATGCCTATGTACCATTAGATTTAATGAACAAAGCGATTGGCCT TTTGAAAGAATATAAGCGCCCAATGCTGTGTACCGAATGGTTGGCCCGTCATGCCGAATCGAAAATGCATGAACAGTTAC CTTTGTTTAACGCTGAAGGTATTGGTTGCTACCAATGGGGGTTAGTCAAAGGCGCGACTCAAACTCATATTCCATGGCCT GAAATTAAACGTACCGATAATGACTATGCGTCCCGCTGGTTCCATGATGTTTTTAATGAGGAGGGTACCGCTTATGCACT GAACCCCAAAACTTGGACATCTGCTTTACTGCTTTTCTACCTGAGTCCGGTATTCTGCCGGACTCATTCCGCCTGTTTTC AGGCTAATGCGCTCTGTATTGTAATAATGGATATATTCTACAATGTCACGCTTTAA
Upstream 100 bases:
>100_bases TGCTGAAAATAATTTCGTGATGTGTGTCACTTTTGATGCGATGACTGTTTGATATTAGTTTATTAGCTAATATATTAGTC ATGATGTGGCTACTTATTAG
Downstream 100 bases:
>100_bases AACTGTGGCTGAATCGTACTTCTTACGGTGATACATCTCGGCTTTCAGGTGACTGAAGAAATTTTCCATCACTGCATTAT CTAAACAATTGCCTTTGCGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 391; Mature: 391
Protein sequence:
>391_residues MRIIMSKWSEEKSWEWHKQQGWLRGFNYLPRTAVNWTEMWQQDTFDPACMTQELQWAAEAGYNTLRTNLPFVVWQHDPDG LMTRVEHFLDICQRVDIKVMLTLMDDCGFSGDHPFIGQQKQPIPGLHNSQAAASPGRNVVMQPYLWGQVERYLKEIIGHF AHDERIVIWDLYNEPTNRMIFTLAGEDAFDPALEEYSHQLMEKAFMWAREVNPTQPLTVGAWHIANILDLGAPIYQHPTD IRALELSDIISFHAYVPLDLMNKAIGLLKEYKRPMLCTEWLARHAESKMHEQLPLFNAEGIGCYQWGLVKGATQTHIPWP EIKRTDNDYASRWFHDVFNEEGTAYALNPKTWTSALLLFYLSPVFCRTHSACFQANALCIVIMDIFYNVTL
Sequences:
>Translated_391_residues MRIIMSKWSEEKSWEWHKQQGWLRGFNYLPRTAVNWTEMWQQDTFDPACMTQELQWAAEAGYNTLRTNLPFVVWQHDPDG LMTRVEHFLDICQRVDIKVMLTLMDDCGFSGDHPFIGQQKQPIPGLHNSQAAASPGRNVVMQPYLWGQVERYLKEIIGHF AHDERIVIWDLYNEPTNRMIFTLAGEDAFDPALEEYSHQLMEKAFMWAREVNPTQPLTVGAWHIANILDLGAPIYQHPTD IRALELSDIISFHAYVPLDLMNKAIGLLKEYKRPMLCTEWLARHAESKMHEQLPLFNAEGIGCYQWGLVKGATQTHIPWP EIKRTDNDYASRWFHDVFNEEGTAYALNPKTWTSALLLFYLSPVFCRTHSACFQANALCIVIMDIFYNVTL >Mature_391_residues MRIIMSKWSEEKSWEWHKQQGWLRGFNYLPRTAVNWTEMWQQDTFDPACMTQELQWAAEAGYNTLRTNLPFVVWQHDPDG LMTRVEHFLDICQRVDIKVMLTLMDDCGFSGDHPFIGQQKQPIPGLHNSQAAASPGRNVVMQPYLWGQVERYLKEIIGHF AHDERIVIWDLYNEPTNRMIFTLAGEDAFDPALEEYSHQLMEKAFMWAREVNPTQPLTVGAWHIANILDLGAPIYQHPTD IRALELSDIISFHAYVPLDLMNKAIGLLKEYKRPMLCTEWLARHAESKMHEQLPLFNAEGIGCYQWGLVKGATQTHIPWP EIKRTDNDYASRWFHDVFNEEGTAYALNPKTWTSALLLFYLSPVFCRTHSACFQANALCIVIMDIFYNVTL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45441; Mature: 45441
Theoretical pI: Translated: 5.66; Mature: 5.66
Prosite motif: PS00659 GLYCOSYL_HYDROL_F5
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 5.9 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRIIMSKWSEEKSWEWHKQQGWLRGFNYLPRTAVNWTEMWQQDTFDPACMTQELQWAAEA CEEECCCCCCCCCCHHHHHCCHHHHCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHC GYNTLRTNLPFVVWQHDPDGLMTRVEHFLDICQRVDIKVMLTLMDDCGFSGDHPFIGQQK CCHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCC QPIPGLHNSQAAASPGRNVVMQPYLWGQVERYLKEIIGHFAHDERIVIWDLYNEPTNRMI CCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEE FTLAGEDAFDPALEEYSHQLMEKAFMWAREVNPTQPLTVGAWHIANILDLGAPIYQHPTD EEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHCCCHHCCCCC IRALELSDIISFHAYVPLDLMNKAIGLLKEYKRPMLCTEWLARHAESKMHEQLPLFNAEG CEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCC IGCYQWGLVKGATQTHIPWPEIKRTDNDYASRWFHDVFNEEGTAYALNPKTWTSALLLFY CCEEHHHHHCCCCCCCCCCHHHCCCCCHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHH LSPVFCRTHSACFQANALCIVIMDIFYNVTL HHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC >Mature Secondary Structure MRIIMSKWSEEKSWEWHKQQGWLRGFNYLPRTAVNWTEMWQQDTFDPACMTQELQWAAEA CEEECCCCCCCCCCHHHHHCCHHHHCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHC GYNTLRTNLPFVVWQHDPDGLMTRVEHFLDICQRVDIKVMLTLMDDCGFSGDHPFIGQQK CCHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCC QPIPGLHNSQAAASPGRNVVMQPYLWGQVERYLKEIIGHFAHDERIVIWDLYNEPTNRMI CCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEE FTLAGEDAFDPALEEYSHQLMEKAFMWAREVNPTQPLTVGAWHIANILDLGAPIYQHPTD EEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHCCCHHCCCCC IRALELSDIISFHAYVPLDLMNKAIGLLKEYKRPMLCTEWLARHAESKMHEQLPLFNAEG CEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCC IGCYQWGLVKGATQTHIPWPEIKRTDNDYASRWFHDVFNEEGTAYALNPKTWTSALLLFY CCEEHHHHHCCCCCCCCCCHHHCCCCCHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHH LSPVFCRTHSACFQANALCIVIMDIFYNVTL HHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA