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The map label for this gene is speC [H]

Identifier: 108813318

GI number: 108813318

Start: 3556999

End: 3559326

Strand: Reverse

Name: speC [H]

Synonym: YPN_3158

Alternate gene names: 108813318

Gene position: 3559326-3556999 (Counterclockwise)

Preceding gene: 108813319

Following gene: 108813317

Centisome position: 78.49

GC content: 45.58

Gene sequence:

>2328_bases
ATGCTGAGACCAGTTCACCTATCACTCAGGCGTGTATTTCCGCCGGGGAAACGTGCGCATTTAATGACATCAATTTACCG
GCATTGCATCAGTGCTCCGCACTCTGTGATGTCATCGATATGCCAAAATGGCAGCCTCATACCTGACCGTCTGAGAGTAA
GTGATATGACACTATTAAAAATAGCAACAAGCGCCCGCCTGGCTTCTTATGTAGAAACTCAGCGCGGAGTGGTGTACCTC
AATCAGACTGACTTTACTGATGTTGCCGCGGTGGTAATGTCGGTTGAAGATGCAAATGCGGGTATATTGTCAATGCTGCA
TGACCTTGGTTTTGCTATTCCTGCGTTTATTGCCGTGACGGCAGAACAGACGGTCTCTGCTGATTATTTGCCCTTGATTA
AAGGTGTCATTACGCTTGGTGAAGCAAATAAAGCTTTTTATAACGCTCAGGTAGAAGCTGCCGCCAGTGAATATCAAAAG
AATCTCTTACCGCCTTTTTTCTCAACACTGAAAAAATATGTCGAGATGAATAACTCGACCTTTGCTTGCCCTGGCCATCA
GGGGGGCGAATTTTTTCGCAAGCATCCTGCAGGACGCCAGTTTTTTGAATTCTACGGTGAGACGATTTTTCGTTCAGATA
TGTGTAATGCCGATGTCAAATTAGGTGATTTACTTATCCATGAAGGGGCGGCAAAAGATGCACAGAAATATGCTGCTAAG
GTATTCAATGCCGATAAAACCTATTTTGTCCTGAACGGTACCTCGGCGGCCAACAAGGTCGTGACCAACGCTTTACTGAC
CCGTGGTGATTTAGTGTTGTTTGACCGCAATAACCATAAATCTAACCATCATGGTGCGCTGATCCAGGCGGGCGCGACGC
CGGTTTATCTGGAAACGGCCCGTAACCCCTTTGGTTTTATTGGTGGTATTGATGCGCACTGCTTCAATGAAGATTATTTA
CGTCAACAACTGCGTGAAGTTGCTCCCGAGCGTGCAGAAGAGGCTCGGCCATTCCGATTAGCGATCATTCAATTGGGTAC
CTACGACGGTACGGTATATAACGCCCGCCAAGTAGTTGATAGTATTGGTCATTTATGCGATTACATTTTGTTTGATTCTG
CTTGGGTGGGTTACGAACAATTTATTCCGATGATGAAGGATTTCTCACCGTTATTACTGGAATTAAATGAAAATGACCCT
GGGATTATTGTGACTCAATCGGTACACAAGCAGCAGGCCGGTTTTTCTCAGACCTCTCAGGTACATAAAAAAGATAATCA
CATTAAAGGACAGAAACGTCACTGTAACCATAAGCGTTTTAATAATGCCTTTATGTTGCATGCATCGACCAGTCCGTTTT
ATCCATTATTTGCGGCATTGGATGTTAATGCCAAAATACACTCTGGTGACAGTGGCCGCCGTATGTGGATGGATTGTGTA
AAACTCGGTATTGAAACCCGTAAATCGTTATTGGCACGCTGTTCGATGTTACGGCCTTTTATTCCTCCAGTTGTTGGCGG
TAAAAATTGGCAAGATTATGCTACTGATGTGATTGCCAATGATGCGCGCTTCTTTAATTTTGTCCCAGATGAACGCTGGC
ATGGATTTGAGGGATATAACCAAGATCAGTATTTGGTTGATCCGTGCAAATTATTGCTGACGACGCCGGGAATTGATGCC
AGTACTGGCCGATATACTTCGTTTGGTATTCCGGCGGCTATTTTGGCGACTTTCCTGCGTGAAAATGGAATTGTGCCAGA
AAAATGTGATCTTAACTCGATCCTATTCCTGCTGACCCCGGCAGAAAATACCGCCAAAATGGCACACCTGGTGGATATGT
TGGTGCAGTTTGAACGCTATGTTGAACAAGATGCGAAGCTGTGTGATGTATTACCGACGATCTATCGTAAGAATGAAGAG
CGTTATCACGGTTATACCTTGCGTCAGTTATGCCAAGAAATGCATGACCTGTACGTCAGCCATGACGTTAAGCAATTGCA
AAAGGATATGTTCCGTAAAGCCAGTTTCCCGCAGGTAGTCATGAACCCGCAAGACGCCAATATTCAGTTTATCCGCGATA
ATATTGAGTTGATTCCTATTGCTGAAGCTGAAGGCCGTATTGCCGCCGAAGGCGCTTTGCCTTATCCACCGGGTGTGCTG
TGTGTGGTGCCCGGTGAAGTGTGGGGTGGGGCGGTTCAGCGTTATTTTCTGGCGCTGGAAGAGGGGATTAACTTACTGCC
GGGCTTTTCACCTGAGTTACAGGGCGTTTATATCGAAAAAGGTGATGTGTCTTGGCGGCGTATCTTTGGTTATGTGATTA
CGCAATAG

Upstream 100 bases:

>100_bases
GCCCCTTATTTCTTCCATGCGGTAAGGCAACCTTTTGCTCACTGTTAGGCATTATTAAAAATAGAGCAGAGTCTCTGATT
TTACTGATGTCTATTGGTCG

Downstream 100 bases:

>100_bases
TCTGATATTTCTCCGCTCCATCAGCCGAGGCCATTTTTTAATTGATGGCCTCGGTATTAAACATCTCATTCGCCCCGCCT
GATAACGCCATCGTTCATTT

Product: ornithine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 775; Mature: 775

Protein sequence:

>775_residues
MLRPVHLSLRRVFPPGKRAHLMTSIYRHCISAPHSVMSSICQNGSLIPDRLRVSDMTLLKIATSARLASYVETQRGVVYL
NQTDFTDVAAVVMSVEDANAGILSMLHDLGFAIPAFIAVTAEQTVSADYLPLIKGVITLGEANKAFYNAQVEAAASEYQK
NLLPPFFSTLKKYVEMNNSTFACPGHQGGEFFRKHPAGRQFFEFYGETIFRSDMCNADVKLGDLLIHEGAAKDAQKYAAK
VFNADKTYFVLNGTSAANKVVTNALLTRGDLVLFDRNNHKSNHHGALIQAGATPVYLETARNPFGFIGGIDAHCFNEDYL
RQQLREVAPERAEEARPFRLAIIQLGTYDGTVYNARQVVDSIGHLCDYILFDSAWVGYEQFIPMMKDFSPLLLELNENDP
GIIVTQSVHKQQAGFSQTSQVHKKDNHIKGQKRHCNHKRFNNAFMLHASTSPFYPLFAALDVNAKIHSGDSGRRMWMDCV
KLGIETRKSLLARCSMLRPFIPPVVGGKNWQDYATDVIANDARFFNFVPDERWHGFEGYNQDQYLVDPCKLLLTTPGIDA
STGRYTSFGIPAAILATFLRENGIVPEKCDLNSILFLLTPAENTAKMAHLVDMLVQFERYVEQDAKLCDVLPTIYRKNEE
RYHGYTLRQLCQEMHDLYVSHDVKQLQKDMFRKASFPQVVMNPQDANIQFIRDNIELIPIAEAEGRIAAEGALPYPPGVL
CVVPGEVWGGAVQRYFLALEEGINLLPGFSPELQGVYIEKGDVSWRRIFGYVITQ

Sequences:

>Translated_775_residues
MLRPVHLSLRRVFPPGKRAHLMTSIYRHCISAPHSVMSSICQNGSLIPDRLRVSDMTLLKIATSARLASYVETQRGVVYL
NQTDFTDVAAVVMSVEDANAGILSMLHDLGFAIPAFIAVTAEQTVSADYLPLIKGVITLGEANKAFYNAQVEAAASEYQK
NLLPPFFSTLKKYVEMNNSTFACPGHQGGEFFRKHPAGRQFFEFYGETIFRSDMCNADVKLGDLLIHEGAAKDAQKYAAK
VFNADKTYFVLNGTSAANKVVTNALLTRGDLVLFDRNNHKSNHHGALIQAGATPVYLETARNPFGFIGGIDAHCFNEDYL
RQQLREVAPERAEEARPFRLAIIQLGTYDGTVYNARQVVDSIGHLCDYILFDSAWVGYEQFIPMMKDFSPLLLELNENDP
GIIVTQSVHKQQAGFSQTSQVHKKDNHIKGQKRHCNHKRFNNAFMLHASTSPFYPLFAALDVNAKIHSGDSGRRMWMDCV
KLGIETRKSLLARCSMLRPFIPPVVGGKNWQDYATDVIANDARFFNFVPDERWHGFEGYNQDQYLVDPCKLLLTTPGIDA
STGRYTSFGIPAAILATFLRENGIVPEKCDLNSILFLLTPAENTAKMAHLVDMLVQFERYVEQDAKLCDVLPTIYRKNEE
RYHGYTLRQLCQEMHDLYVSHDVKQLQKDMFRKASFPQVVMNPQDANIQFIRDNIELIPIAEAEGRIAAEGALPYPPGVL
CVVPGEVWGGAVQRYFLALEEGINLLPGFSPELQGVYIEKGDVSWRRIFGYVITQ
>Mature_775_residues
MLRPVHLSLRRVFPPGKRAHLMTSIYRHCISAPHSVMSSICQNGSLIPDRLRVSDMTLLKIATSARLASYVETQRGVVYL
NQTDFTDVAAVVMSVEDANAGILSMLHDLGFAIPAFIAVTAEQTVSADYLPLIKGVITLGEANKAFYNAQVEAAASEYQK
NLLPPFFSTLKKYVEMNNSTFACPGHQGGEFFRKHPAGRQFFEFYGETIFRSDMCNADVKLGDLLIHEGAAKDAQKYAAK
VFNADKTYFVLNGTSAANKVVTNALLTRGDLVLFDRNNHKSNHHGALIQAGATPVYLETARNPFGFIGGIDAHCFNEDYL
RQQLREVAPERAEEARPFRLAIIQLGTYDGTVYNARQVVDSIGHLCDYILFDSAWVGYEQFIPMMKDFSPLLLELNENDP
GIIVTQSVHKQQAGFSQTSQVHKKDNHIKGQKRHCNHKRFNNAFMLHASTSPFYPLFAALDVNAKIHSGDSGRRMWMDCV
KLGIETRKSLLARCSMLRPFIPPVVGGKNWQDYATDVIANDARFFNFVPDERWHGFEGYNQDQYLVDPCKLLLTTPGIDA
STGRYTSFGIPAAILATFLRENGIVPEKCDLNSILFLLTPAENTAKMAHLVDMLVQFERYVEQDAKLCDVLPTIYRKNEE
RYHGYTLRQLCQEMHDLYVSHDVKQLQKDMFRKASFPQVVMNPQDANIQFIRDNIELIPIAEAEGRIAAEGALPYPPGVL
CVVPGEVWGGAVQRYFLALEEGINLLPGFSPELQGVYIEKGDVSWRRIFGYVITQ

Specific function: Spermidine biosynthesis from ornithine. [C]

COG id: COG1982

COG function: function code E; Arginine/lysine/ornithine decarboxylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Orn/Lys/Arg decarboxylase class-I family [H]

Homologues:

Organism=Escherichia coli, GI87082193, Length=718, Percent_Identity=72.841225626741, Blast_Score=1112, Evalue=0.0,
Organism=Escherichia coli, GI1786909, Length=718, Percent_Identity=69.6378830083566, Blast_Score=1066, Evalue=0.0,
Organism=Escherichia coli, GI221142684, Length=735, Percent_Identity=30.2040816326531, Blast_Score=347, Evalue=1e-96,
Organism=Escherichia coli, GI1790573, Length=611, Percent_Identity=33.5515548281506, Blast_Score=325, Evalue=6e-90,
Organism=Escherichia coli, GI1786384, Length=618, Percent_Identity=32.3624595469256, Blast_Score=314, Evalue=1e-86,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR005308
- InterPro:   IPR011193
- InterPro:   IPR000310
- InterPro:   IPR008286
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01276 OKR_DC_1; PF03711 OKR_DC_1_C; PF03709 OKR_DC_1_N [H]

EC number: =4.1.1.17 [H]

Molecular weight: Translated: 86966; Mature: 86966

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: PS00703 OKR_DC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRPVHLSLRRVFPPGKRAHLMTSIYRHCISAPHSVMSSICQNGSLIPDRLRVSDMTLLK
CCCCCEEHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHCCCHHHH
IATSARLASYVETQRGVVYLNQTDFTDVAAVVMSVEDANAGILSMLHDLGFAIPAFIAVT
HHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHEE
AEQTVSADYLPLIKGVITLGEANKAFYNAQVEAAASEYQKNLLPPFFSTLKKYVEMNNST
HHHHCCCHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCE
FACPGHQGGEFFRKHPAGRQFFEFYGETIFRSDMCNADVKLGDLLIHEGAAKDAQKYAAK
EECCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHEEEECCCCHHHHHHHHH
VFNADKTYFVLNGTSAANKVVTNALLTRGDLVLFDRNNHKSNHHGALIQAGATPVYLETA
HHCCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEECCCCEEEEECC
RNPFGFIGGIDAHCFNEDYLRQQLREVAPERAEEARPFRLAIIQLGTYDGTVYNARQVVD
CCCCCCCCCCCHHCCCHHHHHHHHHHHCHHHHHHCCCEEEEEEEEECCCCCHHHHHHHHH
SIGHLCDYILFDSAWVGYEQFIPMMKDFSPLLLELNENDPGIIVTQSVHKQQAGFSQTSQ
HHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEECCCCCCEEEECHHHHHHCCCHHHHH
VHKKDNHIKGQKRHCNHKRFNNAFMLHASTSPFYPLFAALDVNAKIHSGDSGRRMWMDCV
HHHHCCCCCCCHHCCCCHHCCCEEEEEECCCCCCEEEEEEECCEEEECCCCCHHHHHHHH
KLGIETRKSLLARCSMLRPFIPPVVGGKNWQDYATDVIANDARFFNFVPDERWHGFEGYN
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCC
QDQYLVDPCKLLLTTPGIDASTGRYTSFGIPAAILATFLRENGIVPEKCDLNSILFLLTP
CCCEEECCHHHEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEC
AENTAKMAHLVDMLVQFERYVEQDAKLCDVLPTIYRKNEERYHGYTLRQLCQEMHDLYVS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCHHHHHHHHHHHHHHHH
HDVKQLQKDMFRKASFPQVVMNPQDANIQFIRDNIELIPIAEAEGRIAAEGALPYPPGVL
HHHHHHHHHHHHHCCCCEEEECCCCCCEEEEECCCEEEEEECCCCCEEECCCCCCCCCEE
CVVPGEVWGGAVQRYFLALEEGINLLPGFSPELQGVYIEKGDVSWRRIFGYVITQ
EEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCC
>Mature Secondary Structure
MLRPVHLSLRRVFPPGKRAHLMTSIYRHCISAPHSVMSSICQNGSLIPDRLRVSDMTLLK
CCCCCEEHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHCCCHHHH
IATSARLASYVETQRGVVYLNQTDFTDVAAVVMSVEDANAGILSMLHDLGFAIPAFIAVT
HHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHEE
AEQTVSADYLPLIKGVITLGEANKAFYNAQVEAAASEYQKNLLPPFFSTLKKYVEMNNST
HHHHCCCHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCE
FACPGHQGGEFFRKHPAGRQFFEFYGETIFRSDMCNADVKLGDLLIHEGAAKDAQKYAAK
EECCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHEEEECCCCHHHHHHHHH
VFNADKTYFVLNGTSAANKVVTNALLTRGDLVLFDRNNHKSNHHGALIQAGATPVYLETA
HHCCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEECCCCEEEEECC
RNPFGFIGGIDAHCFNEDYLRQQLREVAPERAEEARPFRLAIIQLGTYDGTVYNARQVVD
CCCCCCCCCCCHHCCCHHHHHHHHHHHCHHHHHHCCCEEEEEEEEECCCCCHHHHHHHHH
SIGHLCDYILFDSAWVGYEQFIPMMKDFSPLLLELNENDPGIIVTQSVHKQQAGFSQTSQ
HHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEECCCCCCEEEECHHHHHHCCCHHHHH
VHKKDNHIKGQKRHCNHKRFNNAFMLHASTSPFYPLFAALDVNAKIHSGDSGRRMWMDCV
HHHHCCCCCCCHHCCCCHHCCCEEEEEECCCCCCEEEEEEECCEEEECCCCCHHHHHHHH
KLGIETRKSLLARCSMLRPFIPPVVGGKNWQDYATDVIANDARFFNFVPDERWHGFEGYN
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCC
QDQYLVDPCKLLLTTPGIDASTGRYTSFGIPAAILATFLRENGIVPEKCDLNSILFLLTP
CCCEEECCHHHEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEC
AENTAKMAHLVDMLVQFERYVEQDAKLCDVLPTIYRKNEERYHGYTLRQLCQEMHDLYVS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCHHHHHHHHHHHHHHHH
HDVKQLQKDMFRKASFPQVVMNPQDANIQFIRDNIELIPIAEAEGRIAAEGALPYPPGVL
HHHHHHHHHHHHHCCCCEEEECCCCCCEEEEECCCEEEEEECCCCCEEECCCCCCCCCEE
CVVPGEVWGGAVQRYFLALEEGINLLPGFSPELQGVYIEKGDVSWRRIFGYVITQ
EEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]