| Definition | Yersinia pestis Nepal516, complete genome. |
|---|---|
| Accession | NC_008149 |
| Length | 4,534,590 |
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The map label for this gene is 108812980
Identifier: 108812980
GI number: 108812980
Start: 3175828
End: 3176154
Strand: Reverse
Name: 108812980
Synonym: YPN_2820
Alternate gene names: NA
Gene position: 3176154-3175828 (Counterclockwise)
Preceding gene: 108812981
Following gene: 108812974
Centisome position: 70.04
GC content: 44.65
Gene sequence:
>327_bases ATGCCATCTGTGAAAGGTTTTAAACATGTTGGTTTTCTTACTCGCAAAAAAGGGCAGAGCTTTGAGGATTTTGTGAAGCA CTGGGAAGAGGTTCATACCGCAATCACACTCAAGCTTCCCGGCTTGAGAGGTTATGTACTCAATCCTATTGACCGCGAAA AATACCCGGACTCACCAGTTGATGGTTTCTCCGAGCTCTGGTTTGACTCCATTGAAGACGCTATTGCGGCTTTTGATTCA CCCATCGGTAAAGCAGCATACGAAGATGTCCCCAATTTCGTAGAGAGTGCCGCTATTACCTATATCACTGAAATCAGAAA GCTGTAA
Upstream 100 bases:
>100_bases GGCGCAGAGACCAGGGCTTCTGCAACCCGGACGCCAAATTTTATCGAGCAGTTTTTCTATTACTTTTTTAAACATTTTAC GTCACTTTAAGGAGGCGATG
Downstream 100 bases:
>100_bases TTTATCCGCACCTAGGCGGTGCGCTGCCCCTGAAACGCCTAGGCGATTTTTCGTCGAAACATACCATAAGCCGCACTGCC CGTAGTGGCAGTGATCACCA
Product: ethyl tert-butyl ether degradation EthD
Products: NA
Alternate protein names: Ethyl Tert-Butyl Ether Degradation
Number of amino acids: Translated: 108; Mature: 107
Protein sequence:
>108_residues MPSVKGFKHVGFLTRKKGQSFEDFVKHWEEVHTAITLKLPGLRGYVLNPIDREKYPDSPVDGFSELWFDSIEDAIAAFDS PIGKAAYEDVPNFVESAAITYITEIRKL
Sequences:
>Translated_108_residues MPSVKGFKHVGFLTRKKGQSFEDFVKHWEEVHTAITLKLPGLRGYVLNPIDREKYPDSPVDGFSELWFDSIEDAIAAFDS PIGKAAYEDVPNFVESAAITYITEIRKL >Mature_107_residues PSVKGFKHVGFLTRKKGQSFEDFVKHWEEVHTAITLKLPGLRGYVLNPIDREKYPDSPVDGFSELWFDSIEDAIAAFDSP IGKAAYEDVPNFVESAAITYITEIRKL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12234; Mature: 12103
Theoretical pI: Translated: 5.17; Mature: 5.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSVKGFKHVGFLTRKKGQSFEDFVKHWEEVHTAITLKLPGLRGYVLNPIDREKYPDSPV CCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCC DGFSELWFDSIEDAIAAFDSPIGKAAYEDVPNFVESAAITYITEIRKL CHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure PSVKGFKHVGFLTRKKGQSFEDFVKHWEEVHTAITLKLPGLRGYVLNPIDREKYPDSPV CCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCC DGFSELWFDSIEDAIAAFDSPIGKAAYEDVPNFVESAAITYITEIRKL CHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA