| Definition | Yersinia pestis Nepal516, complete genome. |
|---|---|
| Accession | NC_008149 |
| Length | 4,534,590 |
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The map label for this gene is 108812890
Identifier: 108812890
GI number: 108812890
Start: 3077215
End: 3078270
Strand: Reverse
Name: 108812890
Synonym: YPN_2730
Alternate gene names: NA
Gene position: 3078270-3077215 (Counterclockwise)
Preceding gene: 108812891
Following gene: 108812889
Centisome position: 67.88
GC content: 52.27
Gene sequence:
>1056_bases ATGAATGATGACTTAACACTGGAGGTGGGTGGCCGGGCGATCACTGGCTGGAGCAAAGTAAAGGTAACGCGGAGCATTGA AAAATTACCCAGCAGTTTTGAACTGTCACTGATGGATCGCTACCCCGCCAGTGGGGGGCAACAGTGGGTTAACCCCGGCG ATCCCTGTGTGGTGAAGTTAGGCAATGACTCGGTATTAAATGGCTATATTGACAGTTGGGATAACGCCATCACGGCCACA ACCCACGTGGTCAGCGCCATGGGACGTGGTAAATGTCAGGATCTGGTGGATTGCTCTGCCAAGTGGCCTAACAGCGTGAT CAGCCAATCAACGGTGTTACAAATCGCACAGAAATTGGCTGAACCTTACGGCATCACCGTGACCTCCGATATTACCGACA TGACCATCGTACCGACGTTCACCCTCAATTGGGGGGAAACGGCACAAACGGTCATTGAGAATGTGACCCGTTGGGCGGCA CTACTCTATTACGATCAGTTGGATGGCAACCTGTTGCTAACCCGTGTTGGGAATCGCAAAGCCGCCAGTGGCGTGGCGCA GGGGGTCAATATTCTGAGCGCCAGCCTGCATACGGACATCAATAAGCGCTTTGTTGATTACACCGGTGTCGTGCTCTCGA CCAATGCGGTTGCCAGGCGCTCGCCCTCGGGGGGGAACAATACCTCGGTACTGGTCAGAGTACAGGATACACAACTGGCG GCGCTGTTGCCGGATCGCTATCGCAACCGCATCGTTATCGTCGAAAACACCATGGACTCACCGCAACTGGTGGAAACCAG TATCGATTGGGAAATCAACCGCAGCGTTGGCCGCGCCAAAGTCCTTACGGTACAGGTAGATAGCTGGCGCGATAGAGAAC AACAATTGTGGGAAATCAACTCGCTTATCCCTATCGATATTCCGGCTTTAGGGCTGCGGGATGAGTTGTGGTTGTTATCT GAAGTGGTTTATCAGAAAGATGCAAAAGGAACGGTGGCAAATATGGTCTTGATGCCACCCGCTGCATTTGACGTTAAGCC CTATAAAATCAAATGA
Upstream 100 bases:
>100_bases ACCGCCTCTATCAGGATGCGTTACGCGGCGATGCGCTGGTGAAAATGGCTAATCCTATTCACCCGGCATTTATGCCCATC CGATTTAAGGCGCTGAATCT
Downstream 100 bases:
>100_bases AACAAGGGGTTAACCATGAGTGATGTCAGTGGGCAAATCTCAACTCTATACCGACAGATAAAAATGCTGCTGGGGATCGG GCGGGTGACCGCTTTTGACG
Product: bacteriophage tail protein
Products: NA
Alternate protein names: Bacteriophage Mu P Protein; Mu P Family Protein; Bacteriophage Mu P; Phage Tail Protein; Bacteriophage Tail Protein; Bacteriophage V Tail Protein; Mu-Like Prophage Tail Protein GpP; Bacteriophage Related Protein; Mu-Like Prophage Tail Protein; Bacteriophage Mu P Family Protein; Prophage; Bacteriophage Tail Protein GpP Mu-Like; Phage Baseplate Protein; Mu-Like Phage Tail Protein GpP
Number of amino acids: Translated: 351; Mature: 351
Protein sequence:
>351_residues MNDDLTLEVGGRAITGWSKVKVTRSIEKLPSSFELSLMDRYPASGGQQWVNPGDPCVVKLGNDSVLNGYIDSWDNAITAT THVVSAMGRGKCQDLVDCSAKWPNSVISQSTVLQIAQKLAEPYGITVTSDITDMTIVPTFTLNWGETAQTVIENVTRWAA LLYYDQLDGNLLLTRVGNRKAASGVAQGVNILSASLHTDINKRFVDYTGVVLSTNAVARRSPSGGNNTSVLVRVQDTQLA ALLPDRYRNRIVIVENTMDSPQLVETSIDWEINRSVGRAKVLTVQVDSWRDREQQLWEINSLIPIDIPALGLRDELWLLS EVVYQKDAKGTVANMVLMPPAAFDVKPYKIK
Sequences:
>Translated_351_residues MNDDLTLEVGGRAITGWSKVKVTRSIEKLPSSFELSLMDRYPASGGQQWVNPGDPCVVKLGNDSVLNGYIDSWDNAITAT THVVSAMGRGKCQDLVDCSAKWPNSVISQSTVLQIAQKLAEPYGITVTSDITDMTIVPTFTLNWGETAQTVIENVTRWAA LLYYDQLDGNLLLTRVGNRKAASGVAQGVNILSASLHTDINKRFVDYTGVVLSTNAVARRSPSGGNNTSVLVRVQDTQLA ALLPDRYRNRIVIVENTMDSPQLVETSIDWEINRSVGRAKVLTVQVDSWRDREQQLWEINSLIPIDIPALGLRDELWLLS EVVYQKDAKGTVANMVLMPPAAFDVKPYKIK >Mature_351_residues MNDDLTLEVGGRAITGWSKVKVTRSIEKLPSSFELSLMDRYPASGGQQWVNPGDPCVVKLGNDSVLNGYIDSWDNAITAT THVVSAMGRGKCQDLVDCSAKWPNSVISQSTVLQIAQKLAEPYGITVTSDITDMTIVPTFTLNWGETAQTVIENVTRWAA LLYYDQLDGNLLLTRVGNRKAASGVAQGVNILSASLHTDINKRFVDYTGVVLSTNAVARRSPSGGNNTSVLVRVQDTQLA ALLPDRYRNRIVIVENTMDSPQLVETSIDWEINRSVGRAKVLTVQVDSWRDREQQLWEINSLIPIDIPALGLRDELWLLS EVVYQKDAKGTVANMVLMPPAAFDVKPYKIK
Specific function: Unknown
COG id: COG4379
COG function: function code R; Mu-like prophage tail protein gpP
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38677; Mature: 38677
Theoretical pI: Translated: 5.22; Mature: 5.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNDDLTLEVGGRAITGWSKVKVTRSIEKLPSSFELSLMDRYPASGGQQWVNPGDPCVVKL CCCCEEEEECCEEECCCHHEEEHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEE GNDSVLNGYIDSWDNAITATTHVVSAMGRGKCQDLVDCSAKWPNSVISQSTVLQIAQKLA CCCCEEECCHHCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHC EPYGITVTSDITDMTIVPTFTLNWGETAQTVIENVTRWAALLYYDQLDGNLLLTRVGNRK CCCCEEEECCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHEEEECCCCCEEEEECCCCH AASGVAQGVNILSASLHTDINKRFVDYTGVVLSTNAVARRSPSGGNNTSVLVRVQDTQLA HHHHHHHHHHHHHHHHHHCHHHHHHEECCEEEECCHHHCCCCCCCCCCEEEEEECCCEEE ALLPDRYRNRIVIVENTMDSPQLVETSIDWEINRSVGRAKVLTVQVDSWRDREQQLWEIN EECCHHHCCEEEEEECCCCCCCEEEEECCEEECCCCCCEEEEEEEECCCCCHHHHHHHHC SLIPIDIPALGLRDELWLLSEVVYQKDAKGTVANMVLMPPAAFDVKPYKIK CCCEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCEEEC >Mature Secondary Structure MNDDLTLEVGGRAITGWSKVKVTRSIEKLPSSFELSLMDRYPASGGQQWVNPGDPCVVKL CCCCEEEEECCEEECCCHHEEEHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEE GNDSVLNGYIDSWDNAITATTHVVSAMGRGKCQDLVDCSAKWPNSVISQSTVLQIAQKLA CCCCEEECCHHCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHC EPYGITVTSDITDMTIVPTFTLNWGETAQTVIENVTRWAALLYYDQLDGNLLLTRVGNRK CCCCEEEECCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHEEEECCCCCEEEEECCCCH AASGVAQGVNILSASLHTDINKRFVDYTGVVLSTNAVARRSPSGGNNTSVLVRVQDTQLA HHHHHHHHHHHHHHHHHHCHHHHHHEECCEEEECCHHHCCCCCCCCCCEEEEEECCCEEE ALLPDRYRNRIVIVENTMDSPQLVETSIDWEINRSVGRAKVLTVQVDSWRDREQQLWEIN EECCHHHCCEEEEEECCCCCCCEEEEECCEEECCCCCCEEEEEEEECCCCCHHHHHHHHC SLIPIDIPALGLRDELWLLSEVVYQKDAKGTVANMVLMPPAAFDVKPYKIK CCCEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA