Click here to switch to the map view.

The map label for this gene is ndpA [C]

Identifier: 108812875

GI number: 108812875

Start: 3063728

End: 3064732

Strand: Reverse

Name: ndpA [C]

Synonym: YPN_2714

Alternate gene names: 108812875

Gene position: 3064732-3063728 (Counterclockwise)

Preceding gene: 108812882

Following gene: 108812874

Centisome position: 67.59

GC content: 48.56

Gene sequence:

>1005_bases
ATGAGTCTGGATATTGACCAGATAGCCTTACATCAGCTTATTAAACGTGATGAACAAACGCTTGATGTGGTGTTGCGGGA
TTCTTTGTTACCGACCAATGCGGTAGTTGAAGAGATGATGGCCGAACTGCACCGCGTTTACAGTGCCAAAAGTAAAGCTT
ACGGGCTATTTAATGAGCAGAGTGAACTGGCTGATGCACTGAAACGAAGCCGTAAGGGTGATGAAGATTTCCTTAGCTTT
AGCCGTGCAGCAACCGGTCGTTTACGTGACGAGCTAGCTAAGTATCCGTTTGCCGAGGGCGGGGTGGTGCTGTTTTGCCA
GTACCGTTATTTGGCCGTGGAGTATTTACTGATCTCTGTGCTAAGCAGCTGTCATAGTATGCGCGTAAACGAACAGCTCG
ATCTGAGTACTACTCATTATCTTGATATCAACCGCGCGGATATTGTCGCCCGGATTGATTTAACCGAGTGGGAAACCAAC
CCGGAATCAACGCGTTATCTGACTTTCCTTACAGGGCGGGTAGGGCGAAAAGTGTCTGACTTCTTTATGGATTTTCTGTC
CGCTGCTGAAGGCTTAGATACCAAAGCGCAAAACCGGGGTTTATTGCAGGCGGTTGATGATTACTGCGCCGATGCCGAGT
TAGGCAAAAATGAGCGTCAGGCCTACCGTCAGCAGGTTTACAGCTATTGTAATGAGCAACTGCAAGCCGGTGAAGAGATT
GCCTTACAGGTGTTGGCTCAAGAGTTACCGAAACTGGGCGAAAAAGATTTCCAGCAATTTTCGGCTGAACAAGGTTATGC
ATTGGAAGAGAGTTTCCCGGCGGATCGAGGGACTTTGCGTCAGTTAACCAAGTTTGCGGGCAGTGGTGGCGGTTTGAGTA
TTAATTTTGATGCACTGCTGCTGGATGAGCGGATTTTCTGGGATGCGGCAACCGATACGCTGACCATTAAAGGTACTCCG
CCGAATTTGCGTGATCAATTACAGCGCCGTGCTGGCAGTAAGTAA

Upstream 100 bases:

>100_bases
AAGAATCTGTAGCCATTAATTGAACGATGCTGACGCTTTTGAGTTGCAGCTCTACCTTATCAGTGATTGAATACGCCCCT
AGCCAAAAGGAGTATTTATC

Downstream 100 bases:

>100_bases
TTGCCCACTTTGCGTATTTAGCCAATAAAAAACGCCGCATCAGCGGCGTTTTTTATTGTGCCCAGAAAACCCCCAGCTAG
GCTGGGGGTTCAGTAAAGCT

Product: nucleoid-associated protein NdpA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 333

Protein sequence:

>334_residues
MSLDIDQIALHQLIKRDEQTLDVVLRDSLLPTNAVVEEMMAELHRVYSAKSKAYGLFNEQSELADALKRSRKGDEDFLSF
SRAATGRLRDELAKYPFAEGGVVLFCQYRYLAVEYLLISVLSSCHSMRVNEQLDLSTTHYLDINRADIVARIDLTEWETN
PESTRYLTFLTGRVGRKVSDFFMDFLSAAEGLDTKAQNRGLLQAVDDYCADAELGKNERQAYRQQVYSYCNEQLQAGEEI
ALQVLAQELPKLGEKDFQQFSAEQGYALEESFPADRGTLRQLTKFAGSGGGLSINFDALLLDERIFWDAATDTLTIKGTP
PNLRDQLQRRAGSK

Sequences:

>Translated_334_residues
MSLDIDQIALHQLIKRDEQTLDVVLRDSLLPTNAVVEEMMAELHRVYSAKSKAYGLFNEQSELADALKRSRKGDEDFLSF
SRAATGRLRDELAKYPFAEGGVVLFCQYRYLAVEYLLISVLSSCHSMRVNEQLDLSTTHYLDINRADIVARIDLTEWETN
PESTRYLTFLTGRVGRKVSDFFMDFLSAAEGLDTKAQNRGLLQAVDDYCADAELGKNERQAYRQQVYSYCNEQLQAGEEI
ALQVLAQELPKLGEKDFQQFSAEQGYALEESFPADRGTLRQLTKFAGSGGGLSINFDALLLDERIFWDAATDTLTIKGTP
PNLRDQLQRRAGSK
>Mature_333_residues
SLDIDQIALHQLIKRDEQTLDVVLRDSLLPTNAVVEEMMAELHRVYSAKSKAYGLFNEQSELADALKRSRKGDEDFLSFS
RAATGRLRDELAKYPFAEGGVVLFCQYRYLAVEYLLISVLSSCHSMRVNEQLDLSTTHYLDINRADIVARIDLTEWETNP
ESTRYLTFLTGRVGRKVSDFFMDFLSAAEGLDTKAQNRGLLQAVDDYCADAELGKNERQAYRQQVYSYCNEQLQAGEEIA
LQVLAQELPKLGEKDFQQFSAEQGYALEESFPADRGTLRQLTKFAGSGGGLSINFDALLLDERIFWDAATDTLTIKGTPP
NLRDQLQRRAGSK

Specific function: Unknown

COG id: COG3081

COG function: function code R; Nucleoid-associated protein

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YejK family [H]

Homologues:

Organism=Escherichia coli, GI1788513, Length=330, Percent_Identity=78.7878787878788, Blast_Score=540, Evalue=1e-155,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007358 [H]

Pfam domain/function: PF04245 NA37 [H]

EC number: NA

Molecular weight: Translated: 37714; Mature: 37583

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLDIDQIALHQLIKRDEQTLDVVLRDSLLPTNAVVEEMMAELHRVYSAKSKAYGLFNEQ
CCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
SELADALKRSRKGDEDFLSFSRAATGRLRDELAKYPFAEGGVVLFCQYRYLAVEYLLISV
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHH
LSSCHSMRVNEQLDLSTTHYLDINRADIVARIDLTEWETNPESTRYLTFLTGRVGRKVSD
HHHHHHHCCCCCCCCCEEEEEECCCCCEEEEEECHHCCCCCCCCEEEEEHHHHHCHHHHH
FFMDFLSAAEGLDTKAQNRGLLQAVDDYCADAELGKNERQAYRQQVYSYCNEQLQAGEEI
HHHHHHHHHCCCCCHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHH
ALQVLAQELPKLGEKDFQQFSAEQGYALEESFPADRGTLRQLTKFAGSGGGLSINFDALL
HHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEHHEE
LDERIFWDAATDTLTIKGTPPNLRDQLQRRAGSK
ECCHHEEECCCCEEEEECCCCCHHHHHHHHCCCC
>Mature Secondary Structure 
SLDIDQIALHQLIKRDEQTLDVVLRDSLLPTNAVVEEMMAELHRVYSAKSKAYGLFNEQ
CCCHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
SELADALKRSRKGDEDFLSFSRAATGRLRDELAKYPFAEGGVVLFCQYRYLAVEYLLISV
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHH
LSSCHSMRVNEQLDLSTTHYLDINRADIVARIDLTEWETNPESTRYLTFLTGRVGRKVSD
HHHHHHHCCCCCCCCCEEEEEECCCCCEEEEEECHHCCCCCCCCEEEEEHHHHHCHHHHH
FFMDFLSAAEGLDTKAQNRGLLQAVDDYCADAELGKNERQAYRQQVYSYCNEQLQAGEEI
HHHHHHHHHCCCCCHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHH
ALQVLAQELPKLGEKDFQQFSAEQGYALEESFPADRGTLRQLTKFAGSGGGLSINFDALL
HHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEHHEE
LDERIFWDAATDTLTIKGTPPNLRDQLQRRAGSK
ECCHHEEECCCCEEEEECCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA