| Definition | Yersinia pestis Nepal516, complete genome. |
|---|---|
| Accession | NC_008149 |
| Length | 4,534,590 |
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The map label for this gene is 108812663
Identifier: 108812663
GI number: 108812663
Start: 2809208
End: 2809678
Strand: Reverse
Name: 108812663
Synonym: YPN_2502
Alternate gene names: NA
Gene position: 2809678-2809208 (Counterclockwise)
Preceding gene: 108812664
Following gene: 108812659
Centisome position: 61.96
GC content: 35.67
Gene sequence:
>471_bases GTGACTTACAATGTTTTTTCGCCAATAAGTATAAACACACCCCTGACACAAAGTATTCCGGCCCATCAATGGTTGTGCAT ATTCGATACTGATGCATATGAAAATGGATATGATACAGGCAGCTACCCAGAAAAAATATCCTTTAACAAGAGGACGCAGA GTTGGGAGGTAAGGAATACTGCTGTTAACTTCAAAGGAAAGTCCCCTTATATAAAATTAAAACTTTACAATATAAAGTCC CCAAACTCTTTGGGGTTCGCAGTAATTGATGAGAATATAAACGAATATGACCGAGGCCTATACAAAGACAAAGATTTGAA AAAAATAATTTATTTCTGCATGATTCACGACATCTATGCTTTGTGTGGAACAGGTAGTCTAACAATAAAAATTAATAATA AGGATGTCGATCTCACCTATTATGCACTGAAATCATTGGAATCAATTCTATTCAGAACCCCACCCCAATAA
Upstream 100 bases:
>100_bases AGAAAATATAGATTCAAAAAACATAACGATCTCAAAATTTAGTATTGATCAGTCTTCTCCAATAGACTATAACACTATCC AAACAAGTGGCTGTGATAAT
Downstream 100 bases:
>100_bases ATAAAATCCAACAACCTTATTAAATCAACTTTTTATTGAGGTTAATTAAAAATGAAATCCTTTAAGAAATTCCGAATGAT ATTGTTGATGATTTTTTCGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 156; Mature: 155
Protein sequence:
>156_residues MTYNVFSPISINTPLTQSIPAHQWLCIFDTDAYENGYDTGSYPEKISFNKRTQSWEVRNTAVNFKGKSPYIKLKLYNIKS PNSLGFAVIDENINEYDRGLYKDKDLKKIIYFCMIHDIYALCGTGSLTIKINNKDVDLTYYALKSLESILFRTPPQ
Sequences:
>Translated_156_residues MTYNVFSPISINTPLTQSIPAHQWLCIFDTDAYENGYDTGSYPEKISFNKRTQSWEVRNTAVNFKGKSPYIKLKLYNIKS PNSLGFAVIDENINEYDRGLYKDKDLKKIIYFCMIHDIYALCGTGSLTIKINNKDVDLTYYALKSLESILFRTPPQ >Mature_155_residues TYNVFSPISINTPLTQSIPAHQWLCIFDTDAYENGYDTGSYPEKISFNKRTQSWEVRNTAVNFKGKSPYIKLKLYNIKSP NSLGFAVIDENINEYDRGLYKDKDLKKIIYFCMIHDIYALCGTGSLTIKINNKDVDLTYYALKSLESILFRTPPQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17989; Mature: 17857
Theoretical pI: Translated: 8.41; Mature: 8.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTYNVFSPISINTPLTQSIPAHQWLCIFDTDAYENGYDTGSYPEKISFNKRTQSWEVRNT CCEECCCCEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCEEEEEE AVNFKGKSPYIKLKLYNIKSPNSLGFAVIDENINEYDRGLYKDKDLKKIIYFCMIHDIYA EEEECCCCCEEEEEEEECCCCCCCEEEEEECCCCHHHCCCCCCCHHHHHHHHHHHHHHHH LCGTGSLTIKINNKDVDLTYYALKSLESILFRTPPQ HHCCCEEEEEECCCCCEEHHHHHHHHHHHHHCCCCC >Mature Secondary Structure TYNVFSPISINTPLTQSIPAHQWLCIFDTDAYENGYDTGSYPEKISFNKRTQSWEVRNT CEECCCCEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCEEEEEE AVNFKGKSPYIKLKLYNIKSPNSLGFAVIDENINEYDRGLYKDKDLKKIIYFCMIHDIYA EEEECCCCCEEEEEEEECCCCCCCEEEEEECCCCHHHCCCCCCCHHHHHHHHHHHHHHHH LCGTGSLTIKINNKDVDLTYYALKSLESILFRTPPQ HHCCCEEEEEECCCCCEEHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA