| Definition | Yersinia pestis Nepal516, complete genome. |
|---|---|
| Accession | NC_008149 |
| Length | 4,534,590 |
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The map label for this gene is 108812652
Identifier: 108812652
GI number: 108812652
Start: 2795612
End: 2796292
Strand: Reverse
Name: 108812652
Synonym: YPN_2491
Alternate gene names: NA
Gene position: 2796292-2795612 (Counterclockwise)
Preceding gene: 108812653
Following gene: 108812651
Centisome position: 61.67
GC content: 53.3
Gene sequence:
>681_bases ATGACGCGACGCTGTCAGACGATATACCTGAATATTTTACCGTGGCGCTGGGCCACTACCGTGGGCTGGCTCCACAGCAA CATCAAGAAGGAAACCGACGTGTTAACTACCGTTTGGAAAAATAAAACCTGTACTTCGAAACATAAAAGCTGGGCCGCCT GGAAAAATAAAATCTGCATCCCCGCACTGGTCTTGTTGCTCAGTGGCTGCGGGCTGACGCAAGCCGTGACCGATAGCACC GTGTCGGCCACAAAATCACTGTTTTATAAGCAGATAAAGGTGCTGCATCTGGACTTTACCGCCCGTGAAGCCCTGAATAC CGATGCGCACGAGGCGAACTCGTCATCGGAGCCGGTAATGGTGCGGGTTTATCAGTTACGTGATGATAAAACCTTCCTCA AAACGGTGTATCAACAACTGGCAAGCGACGGGGAGGCGGCGCTTAAAGATGACCTGCTGGCCAGCCGCAGTGTGGTGGTG AAACCGGGCGGGGCGGTAACACTGGATATGCCGATGGAAAAAGAGACCCAGTTTGTGGCAGTGGTGGCGCTGTTCCGTCA TCCGGATATGGCCAAAGACCACTGGCGTCTGATACTCACGCTGGACGACCTGCATCCCGATAAGCCCCGTACCCTTGAGT TGGGTAATAACAGCCTGACCCTGCGGACGGAGAAAAAATAA
Upstream 100 bases:
>100_bases CGGGCCTGTATCCAACTGACGGTCGCCACCCGGTTGCTGCCGGCGTTGGTGTTGGATGAGACACCGATAAGGCTGGGATT AACCGGCGTGCTGGGGCTGG
Downstream 100 bases:
>100_bases TGCCGGATACCTCCTCGCCGTCACTGTATGAGCAATTGCTGGGCAATTTCACCGGCGGGCTTGACCTGCATCAGGTCAGT GACGAAAACCAGGTCATTCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 226; Mature: 225
Protein sequence:
>226_residues MTRRCQTIYLNILPWRWATTVGWLHSNIKKETDVLTTVWKNKTCTSKHKSWAAWKNKICIPALVLLLSGCGLTQAVTDST VSATKSLFYKQIKVLHLDFTAREALNTDAHEANSSSEPVMVRVYQLRDDKTFLKTVYQQLASDGEAALKDDLLASRSVVV KPGGAVTLDMPMEKETQFVAVVALFRHPDMAKDHWRLILTLDDLHPDKPRTLELGNNSLTLRTEKK
Sequences:
>Translated_226_residues MTRRCQTIYLNILPWRWATTVGWLHSNIKKETDVLTTVWKNKTCTSKHKSWAAWKNKICIPALVLLLSGCGLTQAVTDST VSATKSLFYKQIKVLHLDFTAREALNTDAHEANSSSEPVMVRVYQLRDDKTFLKTVYQQLASDGEAALKDDLLASRSVVV KPGGAVTLDMPMEKETQFVAVVALFRHPDMAKDHWRLILTLDDLHPDKPRTLELGNNSLTLRTEKK >Mature_225_residues TRRCQTIYLNILPWRWATTVGWLHSNIKKETDVLTTVWKNKTCTSKHKSWAAWKNKICIPALVLLLSGCGLTQAVTDSTV SATKSLFYKQIKVLHLDFTAREALNTDAHEANSSSEPVMVRVYQLRDDKTFLKTVYQQLASDGEAALKDDLLASRSVVVK PGGAVTLDMPMEKETQFVAVVALFRHPDMAKDHWRLILTLDDLHPDKPRTLELGNNSLTLRTEKK
Specific function: Unknown
COG id: COG3521
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25577; Mature: 25446
Theoretical pI: Translated: 9.64; Mature: 9.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRRCQTIYLNILPWRWATTVGWLHSNIKKETDVLTTVWKNKTCTSKHKSWAAWKNKICI CCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHH PALVLLLSGCGLTQAVTDSTVSATKSLFYKQIKVLHLDFTAREALNTDAHEANSSSEPVM HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHEEEEECHHHHHHCCCCCCCCCCCCCCEE VRVYQLRDDKTFLKTVYQQLASDGEAALKDDLLASRSVVVKPGGAVTLDMPMEKETQFVA EEEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHCCEEEECCCCEEEEECCCCCCHHHHH VVALFRHPDMAKDHWRLILTLDDLHPDKPRTLELGNNSLTLRTEKK HHHHHHCCCCCCCCEEEEEEEECCCCCCCCEEEECCCEEEEEECCC >Mature Secondary Structure TRRCQTIYLNILPWRWATTVGWLHSNIKKETDVLTTVWKNKTCTSKHKSWAAWKNKICI CCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHH PALVLLLSGCGLTQAVTDSTVSATKSLFYKQIKVLHLDFTAREALNTDAHEANSSSEPVM HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHEEEEECHHHHHHCCCCCCCCCCCCCCEE VRVYQLRDDKTFLKTVYQQLASDGEAALKDDLLASRSVVVKPGGAVTLDMPMEKETQFVA EEEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHCCEEEECCCCEEEEECCCCCCHHHHH VVALFRHPDMAKDHWRLILTLDDLHPDKPRTLELGNNSLTLRTEKK HHHHHHCCCCCCCCEEEEEEEECCCCCCCCEEEECCCEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA