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The map label for this gene is ogl [H]

Identifier: 108812079

GI number: 108812079

Start: 2161343

End: 2162509

Strand: Reverse

Name: ogl [H]

Synonym: YPN_1917

Alternate gene names: 108812079

Gene position: 2162509-2161343 (Counterclockwise)

Preceding gene: 108812081

Following gene: 108812078

Centisome position: 47.69

GC content: 45.93

Gene sequence:

>1167_bases
ATGGCAAAAGGTAAACAAATCCCCCTGACATATCACACTTATCAGGATGCCTCTACCGGCGCACAAGTGACCCGACTGAC
GCCCCCTGATGTCACTTGTCACCGTAACTATTTCTATCAGAAATGTTTCACCCGTGATGGTAGTAAACTGTTGTTCGGTG
GTGCTTTTGATGGCCCATGGAATTACTATTTACTGGATCTTAACAGCCGGGTCGCAACACAACTGACTGAAGGGCGCGGT
GATAATACCTTTGGGGGTTTCCTCTCACCAGAAGATGATGCGCTGTTCTACGTGAAGGATGGCCGTAATTTGATGCGTGT
TGATCTCGCCACATTAGAAGAGAACGTGGTTTATCAGGTGCCAGAAGAGTGGGTCGGTTATGGAACGTGGGTAGCAAATT
CTGATTGTACTAAATTGGTCGGTATTGAGATTAAGCGGGAAGACTGGCAACCGTTGACAGATTGGAAGAAATTCCACGAA
TTTTATTTCACCAAACCGTGTTGCCGCCTGATGCGCGTTGATTTGAAAACTGGCGAATCAGCGGTTATCCTGCAAGAAAA
TCAGTGGCTTGGTCACCCTATTTATCGCCCTTATGACGATAGCACCGTGGCGTTCTGCCATGAAGGGCCACACGATCTGG
TTGATGCACGTATGTGGCTCATCAATGAAGATGGCAGCAATATGCGTAAAGTGAAAACCCATGCAGAAGGTGAGAGCTGT
ACGCATGAAGTCTGGGTTCCAGATGGTTCAGCATTGGTTTATGTCTCTTATTTGAAAGGCAGCTCCGATCGTTTTATTTA
TAGTGCTGATCCAGTGACATTGAAAAATCGTCAATTGACTTCTATGCCTGCCTGCTCACATTTAATGAGTAATTATGATG
GCACACTGATGGTAGGTGATGGGTCTGACGCACCGGTTGATGTGCAAGATAACAGCGGTTATAAGATCGAAAATGATCCT
TTCTTGTATGTCTTCAATATAAAGAATGGGACACAGCATCGTATTGCTCGACATGATACATCATGGCAGGTATTTGAAGG
TGATCGCCAGGTTACGCATCCTCATCCTTCTTTTACGCCTGATGATAAGCAGGTCCTGTTTACGTCAGACGTCCACGGCA
AGCCCGCATTATATATGGTGACATTGCCTGAGTCTGTTTGGCAATAG

Upstream 100 bases:

>100_bases
GGAAAAATGAAACATTGTTTCTATAATGTGAGATAGTATTAGTCGACAGGTTCTCCTGCGAGTAAATTTTAATTCTCTGA
CGATTTTAAGGATTTTCCGG

Downstream 100 bases:

>100_bases
CCGAGTTTTCCATTAGCCTCTCTCTTAGAAAGAGGCTAATTTGCTGTCTGCAAGGCTTTTATCCGATTATTCACATTGGT
TTATTGCACAGTCTCGCAAC

Product: oligogalacturonate lyase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 388; Mature: 387

Protein sequence:

>388_residues
MAKGKQIPLTYHTYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNSRVATQLTEGRG
DNTFGGFLSPEDDALFYVKDGRNLMRVDLATLEENVVYQVPEEWVGYGTWVANSDCTKLVGIEIKREDWQPLTDWKKFHE
FYFTKPCCRLMRVDLKTGESAVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGSNMRKVKTHAEGESC
THEVWVPDGSALVYVSYLKGSSDRFIYSADPVTLKNRQLTSMPACSHLMSNYDGTLMVGDGSDAPVDVQDNSGYKIENDP
FLYVFNIKNGTQHRIARHDTSWQVFEGDRQVTHPHPSFTPDDKQVLFTSDVHGKPALYMVTLPESVWQ

Sequences:

>Translated_388_residues
MAKGKQIPLTYHTYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNSRVATQLTEGRG
DNTFGGFLSPEDDALFYVKDGRNLMRVDLATLEENVVYQVPEEWVGYGTWVANSDCTKLVGIEIKREDWQPLTDWKKFHE
FYFTKPCCRLMRVDLKTGESAVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGSNMRKVKTHAEGESC
THEVWVPDGSALVYVSYLKGSSDRFIYSADPVTLKNRQLTSMPACSHLMSNYDGTLMVGDGSDAPVDVQDNSGYKIENDP
FLYVFNIKNGTQHRIARHDTSWQVFEGDRQVTHPHPSFTPDDKQVLFTSDVHGKPALYMVTLPESVWQ
>Mature_387_residues
AKGKQIPLTYHTYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNSRVATQLTEGRGD
NTFGGFLSPEDDALFYVKDGRNLMRVDLATLEENVVYQVPEEWVGYGTWVANSDCTKLVGIEIKREDWQPLTDWKKFHEF
YFTKPCCRLMRVDLKTGESAVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGSNMRKVKTHAEGESCT
HEVWVPDGSALVYVSYLKGSSDRFIYSADPVTLKNRQLTSMPACSHLMSNYDGTLMVGDGSDAPVDVQDNSGYKIENDPF
LYVFNIKNGTQHRIARHDTSWQVFEGDRQVTHPHPSFTPDDKQVLFTSDVHGKPALYMVTLPESVWQ

Specific function: Involved in degradation of pectin, which causes soft-rod disease in plants [H]

COG id: COG0823

COG function: function code U; Periplasmic component of the Tol biopolymer transport system

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011659
- InterPro:   IPR015943 [H]

Pfam domain/function: PF07676 PD40 [H]

EC number: =4.2.2.6 [H]

Molecular weight: Translated: 44245; Mature: 44114

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKGKQIPLTYHTYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPW
CCCCCCCCEEEEECCCCCCCCEEEEECCCCCEECCCHHHHHHHCCCCCEEEEECCCCCCC
NYYLLDLNSRVATQLTEGRGDNTFGGFLSPEDDALFYVKDGRNLMRVDLATLEENVVYQV
EEEEEECCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEHHCCCEEEEC
PEEWVGYGTWVANSDCTKLVGIEIKREDWQPLTDWKKFHEFYFTKPCCRLMRVDLKTGES
CHHHCCEEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHEEECCCCCE
AVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGSNMRKVKTHAEGESC
EEEEECCCCCCCCCCCCCCCCEEEEECCCCHHHCCEEEEEEECCCCCEEEEEECCCCCCC
THEVWVPDGSALVYVSYLKGSSDRFIYSADPVTLKNRQLTSMPACSHLMSNYDGTLMVGD
EEEEECCCCCEEEEEEEECCCCCCEEEECCCEEECCCCCCCCHHHHHHHHCCCCEEEEEC
GSDAPVDVQDNSGYKIENDPFLYVFNIKNGTQHRIARHDTSWQVFEGDRQVTHPHPSFTP
CCCCCEEEECCCCEEECCCCEEEEEECCCCCHHHHEECCCCEEEEECCCEECCCCCCCCC
DDKQVLFTSDVHGKPALYMVTLPESVWQ
CCCEEEEEECCCCCCEEEEEECCHHHCC
>Mature Secondary Structure 
AKGKQIPLTYHTYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPW
CCCCCCCEEEEECCCCCCCCEEEEECCCCCEECCCHHHHHHHCCCCCEEEEECCCCCCC
NYYLLDLNSRVATQLTEGRGDNTFGGFLSPEDDALFYVKDGRNLMRVDLATLEENVVYQV
EEEEEECCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEHHCCCEEEEC
PEEWVGYGTWVANSDCTKLVGIEIKREDWQPLTDWKKFHEFYFTKPCCRLMRVDLKTGES
CHHHCCEEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHEEECCCCCE
AVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGSNMRKVKTHAEGESC
EEEEECCCCCCCCCCCCCCCCEEEEECCCCHHHCCEEEEEEECCCCCEEEEEECCCCCCC
THEVWVPDGSALVYVSYLKGSSDRFIYSADPVTLKNRQLTSMPACSHLMSNYDGTLMVGD
EEEEECCCCCEEEEEEEECCCCCCEEEECCCEEECCCCCCCCHHHHHHHHCCCCEEEEEC
GSDAPVDVQDNSGYKIENDPFLYVFNIKNGTQHRIARHDTSWQVFEGDRQVTHPHPSFTP
CCCCCEEEECCCCEEECCCCEEEEEECCCCCHHHHEECCCCEEEEECCCEECCCCCCCCC
DDKQVLFTSDVHGKPALYMVTLPESVWQ
CCCEEEEEECCCCCCEEEEEECCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA