| Definition | Yersinia pestis Nepal516, complete genome. |
|---|---|
| Accession | NC_008149 |
| Length | 4,534,590 |
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The map label for this gene is 108811920
Identifier: 108811920
GI number: 108811920
Start: 1983021
End: 1985417
Strand: Reverse
Name: 108811920
Synonym: YPN_1758
Alternate gene names: NA
Gene position: 1985417-1983021 (Counterclockwise)
Preceding gene: 108811921
Following gene: 108811919
Centisome position: 43.78
GC content: 47.39
Gene sequence:
>2397_bases GTGGCGAAGAGAAAATCTACCGGTACCGGCTGGGTTATCCTACTGATAGTCGCTTTAGGGCTGATGACAGATATCCCAAG AGAAGCATGGGTTGCACTGAGTTTTGCTATTTTATGCCTGTTTTTTGTTTGGAAAAATATCCGTTGGGCTAAGATTGGTT CTGGACCGTCCATCAATTCAGACGTACCGGAAGCCTCAGCGATACCCGATCTGGGCGGTTATCAGCTAGACTCTCTGGCC CTTCATCCTGAACTCGTCATTGATGATGAGCTTACCGATCACCTTGATCAATCTGCTAGTGCTAAACCCTCTTCTGGTGA TAAACCCTCTGCGAGTACTAAACAGTCAGAAATTTCAAGAGGCTCTCTGGCCCGTGCGTCCTGGCTTCGCCCCGGCGAAT TAGCCGTGGTTGCCGGGATAACCTTAGCCGATGGCATGATCTACATTGGTAATAAACATAAGAGCAATCGCACCGGAGCA GAGCCGGCCTTTATCAATCCATCAATGCAGGTCGCCGAAGAAGAGGTAGACATTTCATTGGCGCTGATCGATAACGCCCC CGATTACTCGACATGTTCCCCGGAGGCGAGAAAAGCGTATTTGCAATGGTTATCGGAAGGTCGTAAATCTCCAATTGCTC ATATTAGTTATGTTTTCTTATTTTTTTATGGATTAGAGCACCGCGTACTGATTGATGCGAGTATTGATCCAATCGCAAAA CGAGAGCTGCCCATTATTGAGGCGGAAATTAACCGATTGCTGAATATTTATGGAAAAAATAACACTTTTAATCATTATGC TCAGAATTTATTAGTTTATATCGCCAGAGTCGATATAGAGGAGACGCTCTATTTATTGCCACCGCCATTAAGCCGAAATG CCTCAACCGAACTGCCACTTGCTTTGTTGGTTGGCTTAGGGCAATTGGCTGTGGACCAACGGCCATTACCTGCAGAGTGG GCCTGTGCGTGGGGGGGGGCGGATCCAGCCATTAACCAAAACAGATCATTGATGCATTGTCCTGATGCCTTCTCCCAACT TTTCCAGCAGCGCTATCGGGATAAATACGGCGATGGCTTTATCCTGCCCGTCAATAAAACCAAACTACATGTTTTCTACC GTCCTGCTTCCGCAGGATTAATGGGGCAAGAGTTCATCCAGCAGATGGGTGAGTTACCCAACGTGGCAGTATGTAAAGCC AATAGAGATAAGCTGCGGCCATTAATTGAAGCATGTCAGAACGATCTCGAGGCTTATAACCGCTTTGTGAGTTTGAATCC TAAGAAAAAAGCAGCATTAGAAGGGCTGTTACTTCTCCCGATGCCGTTGTGGCCAGAGGCATTAAACGCTGAGCTGGAAA GTATTAAAAGCCGAGTGGGCTATGGCTTACTGTTGATAACATTGGATGAACTTTTTGCCCAACTCAGCCATGCCTGCGCA TCAAACCCACCAGAACGTTTATCCCGCAATGTGGTCATTGCGCTGACTCAGGCGTTGGCATCCTTGCAGGTTGGTATAGA GCCTGATGTTCGGGCAGATAATCGTACACCAACCTTGCAAGATACAGTTGCTCTGTTTCCTATTGAGTCCGCGACGGCGG AGTCGGCAACCTTTGCTGTCTACCGTATCACGATGTTAGCCGTCGAGTTGGCTTGTGCCGCAGTGATGGTTGATGGCCGA GTTGGGGAACCCGAATCGATGATTTTGACGCGGCATATTGATGCCTGGAGCTACCTTAGCCCTGGTCAACGTATGCGTCT GAAAGCCTATCTTCAACCGGGGGTCAGGAAGAATAATACGTTGTTGGCCTTGAAAAATAACCTTGAGCCGCTATCGCTTG AACATCGCCGTGCTATTGCCCGTTTCCTGGCACACCTGATTCAGGTCGAAGGGACCATTACCCCACAAGATGTGAAATTT CTTGAGCGGGTATATAAGCGTTTTGCCCTAGACAGCAAACTGGTTTATACCGATCTTGATAGCCGTGCGACCCCGATGAC ATTAAGTTTGCCGCCACCAGGTTCCGTAGCACTAAATAGTGTTGATCGCATTACGCTACTGAAAAATGAAAGTCAGGAAT TGGTGGCGCTGTTGGAGAATTTATTTCTAACCAAAGTGGTGGCGACAGAGGATAAAGAAGAGATTGATCCACAATCAATG GCGGCAATAATGGCTGATATGCAGGAAGGAACCGTGACGCTCCTACGATTACTGATTTCACGCAATGCATGGGAGCGTGA TAAATTAACCGATATCGCGCTGGACATGGAAATCAGACTGGACGATATACTGATTGAGATTAATCGCAAGATATTGGCTG TTTTTGACGTACCGCTGATTACTGGCGATGCGGTTATTTCAATTAATCGTGATGTCTCGGCTGCATTATTGGCCTGA
Upstream 100 bases:
>100_bases CTGTTTTAAAAAAGTTTTGTTTAAAAGAACTATTTATTAAAAATTGCCAGTAAAGGCAGAATAAAAATTACTATTTTAAG ATAGGGGCAGATAAACCATC
Downstream 100 bases:
>100_bases TAAGCAGACAGTTGATTAATAAATATAGGCTCAATAAACATAGTCTTAATAAACATCGGCAGCGTAACTTGAGCTCAAAC GCAATAATCGCTACCATAAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 798; Mature: 797
Protein sequence:
>798_residues MAKRKSTGTGWVILLIVALGLMTDIPREAWVALSFAILCLFFVWKNIRWAKIGSGPSINSDVPEASAIPDLGGYQLDSLA LHPELVIDDELTDHLDQSASAKPSSGDKPSASTKQSEISRGSLARASWLRPGELAVVAGITLADGMIYIGNKHKSNRTGA EPAFINPSMQVAEEEVDISLALIDNAPDYSTCSPEARKAYLQWLSEGRKSPIAHISYVFLFFYGLEHRVLIDASIDPIAK RELPIIEAEINRLLNIYGKNNTFNHYAQNLLVYIARVDIEETLYLLPPPLSRNASTELPLALLVGLGQLAVDQRPLPAEW ACAWGGADPAINQNRSLMHCPDAFSQLFQQRYRDKYGDGFILPVNKTKLHVFYRPASAGLMGQEFIQQMGELPNVAVCKA NRDKLRPLIEACQNDLEAYNRFVSLNPKKKAALEGLLLLPMPLWPEALNAELESIKSRVGYGLLLITLDELFAQLSHACA SNPPERLSRNVVIALTQALASLQVGIEPDVRADNRTPTLQDTVALFPIESATAESATFAVYRITMLAVELACAAVMVDGR VGEPESMILTRHIDAWSYLSPGQRMRLKAYLQPGVRKNNTLLALKNNLEPLSLEHRRAIARFLAHLIQVEGTITPQDVKF LERVYKRFALDSKLVYTDLDSRATPMTLSLPPPGSVALNSVDRITLLKNESQELVALLENLFLTKVVATEDKEEIDPQSM AAIMADMQEGTVTLLRLLISRNAWERDKLTDIALDMEIRLDDILIEINRKILAVFDVPLITGDAVISINRDVSAALLA
Sequences:
>Translated_798_residues MAKRKSTGTGWVILLIVALGLMTDIPREAWVALSFAILCLFFVWKNIRWAKIGSGPSINSDVPEASAIPDLGGYQLDSLA LHPELVIDDELTDHLDQSASAKPSSGDKPSASTKQSEISRGSLARASWLRPGELAVVAGITLADGMIYIGNKHKSNRTGA EPAFINPSMQVAEEEVDISLALIDNAPDYSTCSPEARKAYLQWLSEGRKSPIAHISYVFLFFYGLEHRVLIDASIDPIAK RELPIIEAEINRLLNIYGKNNTFNHYAQNLLVYIARVDIEETLYLLPPPLSRNASTELPLALLVGLGQLAVDQRPLPAEW ACAWGGADPAINQNRSLMHCPDAFSQLFQQRYRDKYGDGFILPVNKTKLHVFYRPASAGLMGQEFIQQMGELPNVAVCKA NRDKLRPLIEACQNDLEAYNRFVSLNPKKKAALEGLLLLPMPLWPEALNAELESIKSRVGYGLLLITLDELFAQLSHACA SNPPERLSRNVVIALTQALASLQVGIEPDVRADNRTPTLQDTVALFPIESATAESATFAVYRITMLAVELACAAVMVDGR VGEPESMILTRHIDAWSYLSPGQRMRLKAYLQPGVRKNNTLLALKNNLEPLSLEHRRAIARFLAHLIQVEGTITPQDVKF LERVYKRFALDSKLVYTDLDSRATPMTLSLPPPGSVALNSVDRITLLKNESQELVALLENLFLTKVVATEDKEEIDPQSM AAIMADMQEGTVTLLRLLISRNAWERDKLTDIALDMEIRLDDILIEINRKILAVFDVPLITGDAVISINRDVSAALLA >Mature_797_residues AKRKSTGTGWVILLIVALGLMTDIPREAWVALSFAILCLFFVWKNIRWAKIGSGPSINSDVPEASAIPDLGGYQLDSLAL HPELVIDDELTDHLDQSASAKPSSGDKPSASTKQSEISRGSLARASWLRPGELAVVAGITLADGMIYIGNKHKSNRTGAE PAFINPSMQVAEEEVDISLALIDNAPDYSTCSPEARKAYLQWLSEGRKSPIAHISYVFLFFYGLEHRVLIDASIDPIAKR ELPIIEAEINRLLNIYGKNNTFNHYAQNLLVYIARVDIEETLYLLPPPLSRNASTELPLALLVGLGQLAVDQRPLPAEWA CAWGGADPAINQNRSLMHCPDAFSQLFQQRYRDKYGDGFILPVNKTKLHVFYRPASAGLMGQEFIQQMGELPNVAVCKAN RDKLRPLIEACQNDLEAYNRFVSLNPKKKAALEGLLLLPMPLWPEALNAELESIKSRVGYGLLLITLDELFAQLSHACAS NPPERLSRNVVIALTQALASLQVGIEPDVRADNRTPTLQDTVALFPIESATAESATFAVYRITMLAVELACAAVMVDGRV GEPESMILTRHIDAWSYLSPGQRMRLKAYLQPGVRKNNTLLALKNNLEPLSLEHRRAIARFLAHLIQVEGTITPQDVKFL ERVYKRFALDSKLVYTDLDSRATPMTLSLPPPGSVALNSVDRITLLKNESQELVALLENLFLTKVVATEDKEEIDPQSMA AIMADMQEGTVTLLRLLISRNAWERDKLTDIALDMEIRLDDILIEINRKILAVFDVPLITGDAVISINRDVSAALLA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 88201; Mature: 88070
Theoretical pI: Translated: 5.30; Mature: 5.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKRKSTGTGWVILLIVALGLMTDIPREAWVALSFAILCLFFVWKNIRWAKIGSGPSINS CCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCC DVPEASAIPDLGGYQLDSLALHPELVIDDELTDHLDQSASAKPSSGDKPSASTKQSEISR CCCCCCCCCCCCCCCCCCEEECCCEEECCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHC GSLARASWLRPGELAVVAGITLADGMIYIGNKHKSNRTGAEPAFINPSMQVAEEEVDISL CCHHHHHCCCCCCEEEEEEEEECCCEEEECCCCCCCCCCCCCCEECCCHHHHHHHCCEEE ALIDNAPDYSTCSPEARKAYLQWLSEGRKSPIAHISYVFLFFYGLEHRVLIDASIDPIAK EEECCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHH RELPIIEAEINRLLNIYGKNNTFNHYAQNLLVYIARVDIEETLYLLPPPLSRNASTELPL CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHEEECHHHEEEEECCCCCCCCCCCCCH ALLVGLGQLAVDQRPLPAEWACAWGGADPAINQNRSLMHCPDAFSQLFQQRYRDKYGDGF HHHHCCHHHHCCCCCCCCCCEEECCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCEE ILPVNKTKLHVFYRPASAGLMGQEFIQQMGELPNVAVCKANRDKLRPLIEACQNDLEAYN EEECCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHH RFVSLNPKKKAALEGLLLLPMPLWPEALNAELESIKSRVGYGLLLITLDELFAQLSHACA HHCCCCCHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHC SNPPERLSRNVVIALTQALASLQVGIEPDVRADNRTPTLQDTVALFPIESATAESATFAV CCCHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCEEEEECCCCCCCCHHHHH YRITMLAVELACAAVMVDGRVGEPESMILTRHIDAWSYLSPGQRMRLKAYLQPGVRKNNT HHHHHHHHHHHHHHHEECCCCCCCCCEEEEEECCCCCCCCCCHHEEHHEECCCCCCCCCE LLALKNNLEPLSLEHRRAIARFLAHLIQVEGTITPQDVKFLERVYKRFALDSKLVYTDLD EEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEEECC SRATPMTLSLPPPGSVALNSVDRITLLKNESQELVALLENLFLTKVVATEDKEEIDPQSM CCCCCEEEECCCCCCHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCHHHCCHHHH AAIMADMQEGTVTLLRLLISRNAWERDKLTDIALDMEIRLDDILIEINRKILAVFDVPLI HHHHHHHCCHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEHHHHHHHHCCEEEEEEECCEE TGDAVISINRDVSAALLA CCCEEEEECCCCHHHHCC >Mature Secondary Structure AKRKSTGTGWVILLIVALGLMTDIPREAWVALSFAILCLFFVWKNIRWAKIGSGPSINS CCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCC DVPEASAIPDLGGYQLDSLALHPELVIDDELTDHLDQSASAKPSSGDKPSASTKQSEISR CCCCCCCCCCCCCCCCCCEEECCCEEECCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHC GSLARASWLRPGELAVVAGITLADGMIYIGNKHKSNRTGAEPAFINPSMQVAEEEVDISL CCHHHHHCCCCCCEEEEEEEEECCCEEEECCCCCCCCCCCCCCEECCCHHHHHHHCCEEE ALIDNAPDYSTCSPEARKAYLQWLSEGRKSPIAHISYVFLFFYGLEHRVLIDASIDPIAK EEECCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHH RELPIIEAEINRLLNIYGKNNTFNHYAQNLLVYIARVDIEETLYLLPPPLSRNASTELPL CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHEEECHHHEEEEECCCCCCCCCCCCCH ALLVGLGQLAVDQRPLPAEWACAWGGADPAINQNRSLMHCPDAFSQLFQQRYRDKYGDGF HHHHCCHHHHCCCCCCCCCCEEECCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCEE ILPVNKTKLHVFYRPASAGLMGQEFIQQMGELPNVAVCKANRDKLRPLIEACQNDLEAYN EEECCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHH RFVSLNPKKKAALEGLLLLPMPLWPEALNAELESIKSRVGYGLLLITLDELFAQLSHACA HHCCCCCHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHC SNPPERLSRNVVIALTQALASLQVGIEPDVRADNRTPTLQDTVALFPIESATAESATFAV CCCHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCEEEEECCCCCCCCHHHHH YRITMLAVELACAAVMVDGRVGEPESMILTRHIDAWSYLSPGQRMRLKAYLQPGVRKNNT HHHHHHHHHHHHHHHEECCCCCCCCCEEEEEECCCCCCCCCCHHEEHHEECCCCCCCCCE LLALKNNLEPLSLEHRRAIARFLAHLIQVEGTITPQDVKFLERVYKRFALDSKLVYTDLD EEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEEECC SRATPMTLSLPPPGSVALNSVDRITLLKNESQELVALLENLFLTKVVATEDKEEIDPQSM CCCCCEEEECCCCCCHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCHHHCCHHHH AAIMADMQEGTVTLLRLLISRNAWERDKLTDIALDMEIRLDDILIEINRKILAVFDVPLI HHHHHHHCCHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEHHHHHHHHCCEEEEEEECCEE TGDAVISINRDVSAALLA CCCEEEEECCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA