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The map label for this gene is yciC [C]

Identifier: 108811829

GI number: 108811829

Start: 1883352

End: 1884122

Strand: Reverse

Name: yciC [C]

Synonym: YPN_1667

Alternate gene names: 108811829

Gene position: 1884122-1883352 (Counterclockwise)

Preceding gene: 108811832

Following gene: 108811826

Centisome position: 41.55

GC content: 45.01

Gene sequence:

>771_bases
ATGCCTATCACGGCTAACACTTTATACCGTGACAGTTTTAACTTTTTACGTAATCAGATAGCAGCGATCCTGCTGTTGGC
CCTACTGACTGCGTTTATTACCGTCATGCTGAATCAGACATTTATGCCCGCTTCAGAACAACTGAGTATTTTAAGTATTC
CGGAGAATGATATTACGTCATCGGGAAATCTTAGCATCAGTGAGATAGTGTCACAGATGACACCTGAGCAGCAGATGGTG
CTATTGCGGGTCTCTGCGGTGGCCACGTTCTCAGCATTGGTGGGTAATGTATTATTAGTCGGTGGGTTGTTAACTCTGAT
TGCAATGGTTTCTCAGGGCCGCAGGGTCAGTGCGTTACAGGCGATAGGTCTCTCTCTGCCCATCTTACCCCGCTTACTGG
TATTGATGTTTATCAGTACCTTGGTCATTCAACTCGGGTTAACATTCTTCATCGTGCCAGGCGTAGCCATCGCGATCGCA
CTTTCATTGTCACCCATTATCGTCACCAATGAGAGAATGGGAATTTTTGCTGCAATGAAAGCCAGTGCTCAGTTGGCATT
TGCCAATGTGCGGTTGATTGTGCCAGCCATGATGTTATGGATAGCCGTTAAACTTCTTCTATTATTCTTAATTAGCCGCT
TTACTGTACTCCCCCCTACGATAGCTACCATCGTTTTAAGTACGTTAAGTAATTTGGCTTCTGCATTGCTGCTGGTCTAT
TTATTCCGCCTGTATATGCTGTTACGCCCAGTTTCACTGGATAAACAGTAA

Upstream 100 bases:

>100_bases
TAGAAGAAACCCGCTACAGGCTAATGACAGGATCCCACAACGCCCATAACAAGGTATAATCACCCACTAAGCGCTATTCT
TTCGATCCCAAGGAGCTTTC

Downstream 100 bases:

>100_bases
TCAGAGATAAATGATAATTTTTGCCATAGTTTGACGTTGTATCATTCAAAAACGCCTGATGTATTACATCAGGCGTTCAA
ACTGTAGACAGTGAAATCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 255

Protein sequence:

>256_residues
MPITANTLYRDSFNFLRNQIAAILLLALLTAFITVMLNQTFMPASEQLSILSIPENDITSSGNLSISEIVSQMTPEQQMV
LLRVSAVATFSALVGNVLLVGGLLTLIAMVSQGRRVSALQAIGLSLPILPRLLVLMFISTLVIQLGLTFFIVPGVAIAIA
LSLSPIIVTNERMGIFAAMKASAQLAFANVRLIVPAMMLWIAVKLLLLFLISRFTVLPPTIATIVLSTLSNLASALLLVY
LFRLYMLLRPVSLDKQ

Sequences:

>Translated_256_residues
MPITANTLYRDSFNFLRNQIAAILLLALLTAFITVMLNQTFMPASEQLSILSIPENDITSSGNLSISEIVSQMTPEQQMV
LLRVSAVATFSALVGNVLLVGGLLTLIAMVSQGRRVSALQAIGLSLPILPRLLVLMFISTLVIQLGLTFFIVPGVAIAIA
LSLSPIIVTNERMGIFAAMKASAQLAFANVRLIVPAMMLWIAVKLLLLFLISRFTVLPPTIATIVLSTLSNLASALLLVY
LFRLYMLLRPVSLDKQ
>Mature_255_residues
PITANTLYRDSFNFLRNQIAAILLLALLTAFITVMLNQTFMPASEQLSILSIPENDITSSGNLSISEIVSQMTPEQQMVL
LRVSAVATFSALVGNVLLVGGLLTLIAMVSQGRRVSALQAIGLSLPILPRLLVLMFISTLVIQLGLTFFIVPGVAIAIAL
SLSPIIVTNERMGIFAAMKASAQLAFANVRLIVPAMMLWIAVKLLLLFLISRFTVLPPTIATIVLSTLSNLASALLLVYL
FRLYMLLRPVSLDKQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0259 family

Homologues:

Organism=Escherichia coli, GI1787508, Length=249, Percent_Identity=48.995983935743, Blast_Score=239, Evalue=1e-64,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1558_YERPA (Q1C7P8)

Other databases:

- EMBL:   CP000308
- RefSeq:   YP_651469.1
- ProteinModelPortal:   Q1C7P8
- STRING:   Q1C7P8
- GeneID:   4119707
- GenomeReviews:   CP000308_GR
- KEGG:   ypa:YPA_1558
- eggNOG:   NOG45482
- HOGENOM:   HBG391222
- OMA:   YLFRFYM
- ProtClustDB:   PRK02868
- BioCyc:   YPES360102:YPA_1558-MONOMER
- HAMAP:   MF_01067
- InterPro:   IPR009627

Pfam domain/function: PF06790 UPF0259

EC number: NA

Molecular weight: Translated: 27754; Mature: 27623

Theoretical pI: Translated: 11.05; Mature: 11.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xf12288c)-; HASH(0xd657790)-; HASH(0xf72a234)-; HASH(0x102c945c)-; HASH(0xff2d608)-; HASH(0x108616e8)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPITANTLYRDSFNFLRNQIAAILLLALLTAFITVMLNQTFMPASEQLSILSIPENDITS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCC
SGNLSISEIVSQMTPEQQMVLLRVSAVATFSALVGNVLLVGGLLTLIAMVSQGRRVSALQ
CCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
AIGLSLPILPRLLVLMFISTLVIQLGLTFFIVPGVAIAIALSLSPIIVTNERMGIFAAMK
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHH
ASAQLAFANVRLIVPAMMLWIAVKLLLLFLISRFTVLPPTIATIVLSTLSNLASALLLVY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
LFRLYMLLRPVSLDKQ
HHHHHHHHCCCCCCCH
>Mature Secondary Structure 
PITANTLYRDSFNFLRNQIAAILLLALLTAFITVMLNQTFMPASEQLSILSIPENDITS
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCC
SGNLSISEIVSQMTPEQQMVLLRVSAVATFSALVGNVLLVGGLLTLIAMVSQGRRVSALQ
CCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
AIGLSLPILPRLLVLMFISTLVIQLGLTFFIVPGVAIAIALSLSPIIVTNERMGIFAAMK
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHH
ASAQLAFANVRLIVPAMMLWIAVKLLLLFLISRFTVLPPTIATIVLSTLSNLASALLLVY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
LFRLYMLLRPVSLDKQ
HHHHHHHHCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA