| Definition | Yersinia pestis Nepal516, complete genome. |
|---|---|
| Accession | NC_008149 |
| Length | 4,534,590 |
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The map label for this gene is 108811759
Identifier: 108811759
GI number: 108811759
Start: 1802053
End: 1802592
Strand: Reverse
Name: 108811759
Synonym: YPN_1596
Alternate gene names: NA
Gene position: 1802592-1802053 (Counterclockwise)
Preceding gene: 108811768
Following gene: 108811731
Centisome position: 39.75
GC content: 40.74
Gene sequence:
>540_bases ATGCCTCACGGTGAGGTAAATTTATTGTCACACCGTGCGTCATTGAAGTCAACCCCACGGTGGGGCATAATTTCAAGTGT CATTACTATCATCAAAATTGGAATCGCCATGAGTAGAGAAGACCCGCAATTACGAATCCGGCTTCCTGTTGAATTAAAAG AAAAAATAGAAGGGTCGGCAAAAGAAAATAATCGCTCTATGAATGCCGAAATAGTTCAGAGATTAGACGCGAGCTATCTT AGTGAATTTCCAGAAGATGGCGTTCTTTCGGCTAAAGACGCACTTCAGATCGCAAATAATGCCAAAGAAAGCCTATCCAA CCTCATATTCACGAGAACGTTTGCCGAAATTAGCAAGAAAGTAAGGATAGGACACAAAAGTTTTTGCATTGATCTTGATG ACTTAGAACTTGAGGTTCTTAGCGATGATGATTTCAACTACGTTCTTAAACGAACTTTTTCACGATTGACCGAACTTGGC TATATTCTCTCCGAGAAATCATTAGATAGTGGCGGGTTCATGATTGAGATCCCTGAGTAG
Upstream 100 bases:
>100_bases GATTTTCACCATTGTTTTGTATTGCCAGACAGATTTCCTCAGGGAAACGGATTTTGCGCTGATACATGTCTTTTGCTTTT TGCATTTGGATTCTCCTTGA
Downstream 100 bases:
>100_bases ATGCCAATAAAAAACCCACCAGAGTGGGCTAGAATGCAAAAACCCGCCGGAGCGGGTTTAGTTTTTATTCGGAGCAACTT AGTGCAATTGTTCTGTACTG
Product: phage regulatory protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 179; Mature: 178
Protein sequence:
>179_residues MPHGEVNLLSHRASLKSTPRWGIISSVITIIKIGIAMSREDPQLRIRLPVELKEKIEGSAKENNRSMNAEIVQRLDASYL SEFPEDGVLSAKDALQIANNAKESLSNLIFTRTFAEISKKVRIGHKSFCIDLDDLELEVLSDDDFNYVLKRTFSRLTELG YILSEKSLDSGGFMIEIPE
Sequences:
>Translated_179_residues MPHGEVNLLSHRASLKSTPRWGIISSVITIIKIGIAMSREDPQLRIRLPVELKEKIEGSAKENNRSMNAEIVQRLDASYL SEFPEDGVLSAKDALQIANNAKESLSNLIFTRTFAEISKKVRIGHKSFCIDLDDLELEVLSDDDFNYVLKRTFSRLTELG YILSEKSLDSGGFMIEIPE >Mature_178_residues PHGEVNLLSHRASLKSTPRWGIISSVITIIKIGIAMSREDPQLRIRLPVELKEKIEGSAKENNRSMNAEIVQRLDASYLS EFPEDGVLSAKDALQIANNAKESLSNLIFTRTFAEISKKVRIGHKSFCIDLDDLELEVLSDDDFNYVLKRTFSRLTELGY ILSEKSLDSGGFMIEIPE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20139; Mature: 20008
Theoretical pI: Translated: 5.12; Mature: 5.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPHGEVNLLSHRASLKSTPRWGIISSVITIIKIGIAMSREDPQLRIRLPVELKEKIEGSA CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHCCCCC KENNRSMNAEIVQRLDASYLSEFPEDGVLSAKDALQIANNAKESLSNLIFTRTFAEISKK CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VRIGHKSFCIDLDDLELEVLSDDDFNYVLKRTFSRLTELGYILSEKSLDSGGFMIEIPE HHCCCHHEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECC >Mature Secondary Structure PHGEVNLLSHRASLKSTPRWGIISSVITIIKIGIAMSREDPQLRIRLPVELKEKIEGSA CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHCCCCC KENNRSMNAEIVQRLDASYLSEFPEDGVLSAKDALQIANNAKESLSNLIFTRTFAEISKK CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VRIGHKSFCIDLDDLELEVLSDDDFNYVLKRTFSRLTELGYILSEKSLDSGGFMIEIPE HHCCCHHEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA