| Definition | Yersinia pestis Nepal516, complete genome. |
|---|---|
| Accession | NC_008149 |
| Length | 4,534,590 |
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The map label for this gene is 108811637
Identifier: 108811637
GI number: 108811637
Start: 1677577
End: 1678527
Strand: Reverse
Name: 108811637
Synonym: YPN_1474
Alternate gene names: NA
Gene position: 1678527-1677577 (Counterclockwise)
Preceding gene: 108811638
Following gene: 108811636
Centisome position: 37.02
GC content: 37.12
Gene sequence:
>951_bases ATGCTCCTAAATAATATTACGCCAGTGAATAAATCACTGACACTACAAGATTTATTAGGAATTTTGAGTCACTCATCGGC AATTTCCAATGTGGCAAATGGGATTTATGTGGAAAGCGAAATCCTTGAAGTAGGTTCATGGCTTTCAGCCTACGCGGCTA ATAAAGATGAAATTTTTTCGCAGATCATTACCGAGTTGGAGAACCCTTATCAATTCCAGCTGGAGAATGACATACAGGCA CCGAGTTTTATTCTTTACAGTAATGAACGCATAACTATTCGTCTTGTTATGTGGCTCCCATTGCAGGGAAAATTAGATCG GACACCTTATTCCTACGAAGAAGCACATGATCATAATTTTGACTTTTGGACAGTGAATTTTTTTGGAGGTGGCTATCGAA CTCGGCTCTATGACTATGATTACGATAAAGTTAGTGGCGTAAATAACGAAGTTGTAGAACTTAATTGTTATGGAGATAAG ATTCTTTCCCCGAATACAGTTATGTTTTATTTTCGTAGTAAGGATGTTCATACTCAATATCCGCCTGATGAATTATCAGT ATCGCTCAATTTAATAGTGCGACCAATAAAATCGAAGCATCAATACGAATTTCAGATAGATTCAGATGCATTGGAAGGAA AAATAGAGGCAAGAATTAAAAAGGGAAGATATGAGCGCTACGCTTTTCAAAATGTGTTATATAACGGCCTGCTGAGTCTT GAAAATGAAAAAAGTCGTCAACTGGTTCACAAAGTGTCTCTTTGTAACCATCGAGAAGAGATACGATTAATCGCTTATGA AGCTTTACTTAAGCACGCCCAAAAAAAAGGTAATGTGAGTGATATAAAGAGCATTAGTGAACAAGCATTTAAAGACCAAA GCCTCTATATCAAAAATAAGATTTCTCACAGTATTGGAAGCATGCCATGCATGAGTCCAAAACCCCGCTAA
Upstream 100 bases:
>100_bases GCAAATGATACCGTATTAAGCGATGTGCTCACACTAGAGAAAAGTCATTATGTCAGGCGTGTACTTGCCGAGATAAACAT GGCGCAAGGAGAAACTAGCA
Downstream 100 bases:
>100_bases TATAGTTAGCGGATTACTTTATCTCAAGAAGATAGGAGTCATATTATGACTAAAAATACTGCGACTAAAGTAAAAAGCAT CAAACTCGTAACCTTTGGCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 316; Mature: 316
Protein sequence:
>316_residues MLLNNITPVNKSLTLQDLLGILSHSSAISNVANGIYVESEILEVGSWLSAYAANKDEIFSQIITELENPYQFQLENDIQA PSFILYSNERITIRLVMWLPLQGKLDRTPYSYEEAHDHNFDFWTVNFFGGGYRTRLYDYDYDKVSGVNNEVVELNCYGDK ILSPNTVMFYFRSKDVHTQYPPDELSVSLNLIVRPIKSKHQYEFQIDSDALEGKIEARIKKGRYERYAFQNVLYNGLLSL ENEKSRQLVHKVSLCNHREEIRLIAYEALLKHAQKKGNVSDIKSISEQAFKDQSLYIKNKISHSIGSMPCMSPKPR
Sequences:
>Translated_316_residues MLLNNITPVNKSLTLQDLLGILSHSSAISNVANGIYVESEILEVGSWLSAYAANKDEIFSQIITELENPYQFQLENDIQA PSFILYSNERITIRLVMWLPLQGKLDRTPYSYEEAHDHNFDFWTVNFFGGGYRTRLYDYDYDKVSGVNNEVVELNCYGDK ILSPNTVMFYFRSKDVHTQYPPDELSVSLNLIVRPIKSKHQYEFQIDSDALEGKIEARIKKGRYERYAFQNVLYNGLLSL ENEKSRQLVHKVSLCNHREEIRLIAYEALLKHAQKKGNVSDIKSISEQAFKDQSLYIKNKISHSIGSMPCMSPKPR >Mature_316_residues MLLNNITPVNKSLTLQDLLGILSHSSAISNVANGIYVESEILEVGSWLSAYAANKDEIFSQIITELENPYQFQLENDIQA PSFILYSNERITIRLVMWLPLQGKLDRTPYSYEEAHDHNFDFWTVNFFGGGYRTRLYDYDYDKVSGVNNEVVELNCYGDK ILSPNTVMFYFRSKDVHTQYPPDELSVSLNLIVRPIKSKHQYEFQIDSDALEGKIEARIKKGRYERYAFQNVLYNGLLSL ENEKSRQLVHKVSLCNHREEIRLIAYEALLKHAQKKGNVSDIKSISEQAFKDQSLYIKNKISHSIGSMPCMSPKPR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36466; Mature: 36466
Theoretical pI: Translated: 6.61; Mature: 6.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLLNNITPVNKSLTLQDLLGILSHSSAISNVANGIYVESEILEVGSWLSAYAANKDEIFS CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHHCCCHHHHHH QIITELENPYQFQLENDIQAPSFILYSNERITIRLVMWLPLQGKLDRTPYSYEEAHDHNF HHHHHCCCCEEEEECCCCCCCEEEEEECCEEEEEEEEEECCCCCCCCCCCCHHHCCCCCC DFWTVNFFGGGYRTRLYDYDYDKVSGVNNEVVELNCYGDKILSPNTVMFYFRSKDVHTQY CEEEEEEECCCEEEEEEECCCHHHCCCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCCC PPDELSVSLNLIVRPIKSKHQYEFQIDSDALEGKIEARIKKGRYERYAFQNVLYNGLLSL CCHHHEEEEEEEEEECCCCCEEEEEECCHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHCC ENEKSRQLVHKVSLCNHREEIRLIAYEALLKHAQKKGNVSDIKSISEQAFKDQSLYIKNK CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEHHH ISHSIGSMPCMSPKPR HHHHHCCCCCCCCCCC >Mature Secondary Structure MLLNNITPVNKSLTLQDLLGILSHSSAISNVANGIYVESEILEVGSWLSAYAANKDEIFS CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHHCCCHHHHHH QIITELENPYQFQLENDIQAPSFILYSNERITIRLVMWLPLQGKLDRTPYSYEEAHDHNF HHHHHCCCCEEEEECCCCCCCEEEEEECCEEEEEEEEEECCCCCCCCCCCCHHHCCCCCC DFWTVNFFGGGYRTRLYDYDYDKVSGVNNEVVELNCYGDKILSPNTVMFYFRSKDVHTQY CEEEEEEECCCEEEEEEECCCHHHCCCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCCC PPDELSVSLNLIVRPIKSKHQYEFQIDSDALEGKIEARIKKGRYERYAFQNVLYNGLLSL CCHHHEEEEEEEEEECCCCCEEEEEECCHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHCC ENEKSRQLVHKVSLCNHREEIRLIAYEALLKHAQKKGNVSDIKSISEQAFKDQSLYIKNK CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEHHH ISHSIGSMPCMSPKPR HHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA