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The map label for this gene is yopM [H]

Identifier: 108811526

GI number: 108811526

Start: 1548372

End: 1549499

Strand: Reverse

Name: yopM [H]

Synonym: YPN_1363

Alternate gene names: 108811526

Gene position: 1549499-1548372 (Counterclockwise)

Preceding gene: 108811537

Following gene: 108811525

Centisome position: 34.17

GC content: 37.32

Gene sequence:

>1128_bases
ATGGGTTTAAATTGTTTTGGTATCAGTTTTTCATCACCGAATATTACTTTAGATAGTGACCCTACTCACCAGAAATTGTC
AAAATCTGGCTATCACGCTATATGGAAAGAGTGGAAAGAAAATGCAGTTCCCGGAGAAGGGGAACAGCGTGGTATTGCCG
TAGAAAGAATGAAATATTGCCTGAAAAAAAACTTAACCGAGCTCAACCTCAACAATCTTGGTTTACGTTCATTGCCCGAT
ATTTTACCCCCTTGTACCACACTGAACGTCTCAAATAATTATCTAACTGAACTGCCGCCGTTGCCAGCTAATCTGACACA
TCTCAATTTAGCCAATAATCAATTAACTAAGCTCTCCAGCCATTTTCCACTGCCCGATAATTTGACCCACCTCAATTTAG
CCAATAATCAATTGACTGAGCTCTCCGGCCATTTTCCACTGCCCGATAATTTGACACACCTCGACTTAGCCAATAATCAA
TTGACTGAGCTCTCCCGCTATTTTCCACTGCCTGGTAATTTGACACACCTCAACTTAGCCAATAATCAATTGGTAGCCCC
CCCTGAACTCCCTAATACCTTAGAGTCACTAAATGCAGATAATAATCAGTTAAAATATTTGCCAGATATACTGCCAACAT
CTCTGCGTTTAATCACTGCAAGTAACAACCAAATCACCCAGTTACCTGAAGCTATTTTTAATTTATTTAATGACAGTGAG
ATCGTACTAAATAATAATCCATTAACTGAAAAGACGTATTATTTTCCATATGGTTCCAATGTGCCAAATATATTAATGTC
ACCCTCATGCCTAACAAAATTTAAATATTCATCCTATGAACCACTCAGTGAGATCGTAAAGCACTGGCTGACACCAGAGC
AACAACAACTTTTAGAAAAAAAATGGTTAGAAATAGAAAAAGATCCAAGCTCAGAAGGATTGACAAAATATCTCAACCAA
CTCATTAACATACCAAAATCAATACAAAAACCAAGACCAAACCCCCAACTATATGTTCGAGATCTTAGTGATTTTTCTAA
ACAGCAGATGACAAAATTATTATTCAACATAGTAGACTCAAATTCCCTGCGTCAGGCGATCTTTTTAAAAAATAATCCTA
ATTGGTAA

Upstream 100 bases:

>100_bases
AGAAAAACTTAAAAAATAATTTAATATCAGTTTTTTCCCTTATACAGGAAGCCGTATTTATCAAGCAGTATGCCCCTGTT
AAAATAAGGAGCTTACTGTT

Downstream 100 bases:

>100_bases
GTTAACACCCTGTCCCCCATCAGCGATAACCCTGTGGTGGGGGCTGGGTAACCTATACCCGAGACCTTTTCCTTTCCATC
TGCTACAGCAAAAATTTTGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 374

Protein sequence:

>375_residues
MGLNCFGISFSSPNITLDSDPTHQKLSKSGYHAIWKEWKENAVPGEGEQRGIAVERMKYCLKKNLTELNLNNLGLRSLPD
ILPPCTTLNVSNNYLTELPPLPANLTHLNLANNQLTKLSSHFPLPDNLTHLNLANNQLTELSGHFPLPDNLTHLDLANNQ
LTELSRYFPLPGNLTHLNLANNQLVAPPELPNTLESLNADNNQLKYLPDILPTSLRLITASNNQITQLPEAIFNLFNDSE
IVLNNNPLTEKTYYFPYGSNVPNILMSPSCLTKFKYSSYEPLSEIVKHWLTPEQQQLLEKKWLEIEKDPSSEGLTKYLNQ
LINIPKSIQKPRPNPQLYVRDLSDFSKQQMTKLLFNIVDSNSLRQAIFLKNNPNW

Sequences:

>Translated_375_residues
MGLNCFGISFSSPNITLDSDPTHQKLSKSGYHAIWKEWKENAVPGEGEQRGIAVERMKYCLKKNLTELNLNNLGLRSLPD
ILPPCTTLNVSNNYLTELPPLPANLTHLNLANNQLTKLSSHFPLPDNLTHLNLANNQLTELSGHFPLPDNLTHLDLANNQ
LTELSRYFPLPGNLTHLNLANNQLVAPPELPNTLESLNADNNQLKYLPDILPTSLRLITASNNQITQLPEAIFNLFNDSE
IVLNNNPLTEKTYYFPYGSNVPNILMSPSCLTKFKYSSYEPLSEIVKHWLTPEQQQLLEKKWLEIEKDPSSEGLTKYLNQ
LINIPKSIQKPRPNPQLYVRDLSDFSKQQMTKLLFNIVDSNSLRQAIFLKNNPNW
>Mature_374_residues
GLNCFGISFSSPNITLDSDPTHQKLSKSGYHAIWKEWKENAVPGEGEQRGIAVERMKYCLKKNLTELNLNNLGLRSLPDI
LPPCTTLNVSNNYLTELPPLPANLTHLNLANNQLTKLSSHFPLPDNLTHLNLANNQLTELSGHFPLPDNLTHLDLANNQL
TELSRYFPLPGNLTHLNLANNQLVAPPELPNTLESLNADNNQLKYLPDILPTSLRLITASNNQITQLPEAIFNLFNDSEI
VLNNNPLTEKTYYFPYGSNVPNILMSPSCLTKFKYSSYEPLSEIVKHWLTPEQQQLLEKKWLEIEKDPSSEGLTKYLNQL
INIPKSIQKPRPNPQLYVRDLSDFSKQQMTKLLFNIVDSNSLRQAIFLKNNPNW

Specific function: Effector proteins function to alter host cell physiology and promote bacterial survival in host tissues [H]

COG id: COG4886

COG function: function code S; Leucine-rich repeat (LRR) protein

Gene ontology:

Cell location: Cell outer membrane. Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 15 LRR (leucine-rich) repeats [H]

Homologues:

Organism=Homo sapiens, GI21361633, Length=205, Percent_Identity=33.6585365853659, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI52426787, Length=168, Percent_Identity=34.5238095238095, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI238908508, Length=213, Percent_Identity=33.3333333333333, Blast_Score=66, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001611 [H]

Pfam domain/function: PF00560 LRR_1 [H]

EC number: NA

Molecular weight: Translated: 42569; Mature: 42438

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLNCFGISFSSPNITLDSDPTHQKLSKSGYHAIWKEWKENAVPGEGEQRGIAVERMKYC
CCCEEEEEEECCCCEEECCCCCHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
LKKNLTELNLNNLGLRSLPDILPPCTTLNVSNNYLTELPPLPANLTHLNLANNQLTKLSS
HHCCCCEECCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCCCCCEEEECCCCHHHHHHC
HFPLPDNLTHLNLANNQLTELSGHFPLPDNLTHLDLANNQLTELSRYFPLPGNLTHLNLA
CCCCCCCCEEEEECCCHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHCCCCCCEEEEEEC
NNQLVAPPELPNTLESLNADNNQLKYLPDILPTSLRLITASNNQITQLPEAIFNLFNDSE
CCCEECCCCCCHHHHHCCCCCCCEEECHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCE
IVLNNNPLTEKTYYFPYGSNVPNILMSPSCLTKFKYSSYEPLSEIVKHWLTPEQQQLLEK
EEECCCCCCCCEEEECCCCCCCHHHCCCHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHH
KWLEIEKDPSSEGLTKYLNQLINIPKSIQKPRPNPQLYVRDLSDFSKQQMTKLLFNIVDS
HHCCCCCCCCCCHHHHHHHHHHCCCHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHCC
NSLRQAIFLKNNPNW
CCCEEEEEECCCCCC
>Mature Secondary Structure 
GLNCFGISFSSPNITLDSDPTHQKLSKSGYHAIWKEWKENAVPGEGEQRGIAVERMKYC
CCEEEEEEECCCCEEECCCCCHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
LKKNLTELNLNNLGLRSLPDILPPCTTLNVSNNYLTELPPLPANLTHLNLANNQLTKLSS
HHCCCCEECCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCCCCCEEEECCCCHHHHHHC
HFPLPDNLTHLNLANNQLTELSGHFPLPDNLTHLDLANNQLTELSRYFPLPGNLTHLNLA
CCCCCCCCEEEEECCCHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHCCCCCCEEEEEEC
NNQLVAPPELPNTLESLNADNNQLKYLPDILPTSLRLITASNNQITQLPEAIFNLFNDSE
CCCEECCCCCCHHHHHCCCCCCCEEECHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCE
IVLNNNPLTEKTYYFPYGSNVPNILMSPSCLTKFKYSSYEPLSEIVKHWLTPEQQQLLEK
EEECCCCCCCCEEEECCCCCCCHHHCCCHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHH
KWLEIEKDPSSEGLTKYLNQLINIPKSIQKPRPNPQLYVRDLSDFSKQQMTKLLFNIVDS
HHCCCCCCCCCCHHHHHHHHHHCCCHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHCC
NSLRQAIFLKNNPNW
CCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2670888; 9746557; 9748454; 11586360; 11575934 [H]