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The map label for this gene is ddpA [H]

Identifier: 108810805

GI number: 108810805

Start: 750551

End: 751723

Strand: Reverse

Name: ddpA [H]

Synonym: YPN_0640

Alternate gene names: 108810805

Gene position: 751723-750551 (Counterclockwise)

Preceding gene: 108810807

Following gene: 108810804

Centisome position: 16.58

GC content: 49.28

Gene sequence:

>1173_bases
ATGAAAGCAAAAGTTCTGTCATTATTCGTTCTGGCAGCGTTATCTGGCGGCACATTGGCAGCAACGCCGCCGGATACGCT
GATAGTCGTGCAATCCCTGGATGACATCGTCAGCCTTGACCCCGCAGAAAGTAACGAGCTGTCTAGCATTCAGACAGTAC
CGAGCCTCTATCAGCGCTTAGTTCAAGCCGACCGCGATAACCCGGCAAAAGTAGTACCCGTCTTGGCCGAAAGCTGGGAA
GGCGATGCCGCAGCCAAAACATTAACGGTCAAATTGCGTCCACAGGCGGTATTTGCATCGGGTAATCCGGTACAAGCCGA
TGACGTCATTTATTCTTTCACCCGCGCAGTGAAAATGAATCGCTCACCTGCTTTTATTCTCAACGTCTTGGGCTGGCAGG
CTGATAACATCGATCAACACCTAAAGAAAATTGATAATAATACCGTGCAAGTAAGCTGGAGTGCAGATGTCAGCCCAGCG
GTTGCCTTGAATATTTTATCAACGCCCATTGCATCCATTGTTGATAAAAAAACCGTGACGGCGAATACCAAAGATGACGA
TTACGGTAATGCGTGGCTCAAAATGCACTCTGCCGGTAGCGGCGCCTTCAAAATGCGGGTTTATCAGCCGCACCAAGCCA
TTGTGCTGGATGCCAACCCTACGTCACCGGGTAATCAGCCATTAATTAAGAATATTATTATTAAAAACGTGCCTGACCCC
AGTGCCCGCCGCCTGTTAATTCAACAAGGTGATGCTGATATTGCACGGGAATTAGGGCCGGACCAAATTACTGCGCTGAA
AACACAGGCCGGCGTCAAGGTCGTTGAAATCCCATCAGCAGAACAAAACTATTTGGTGTTTAACACCGCTAATGCCGCTA
ACCCGCTGCTGAGCAGGCCAGAACTCTGGCAAGCAGCCCGTTATCTGGTGGATTACCAAGGTATTACCAAAGATCTGTTG
AAAGATCAGTATTTCATTCATCAAAGCTTCCTCCCCGTTGGTTTGCCTGGGGCATTGGCAAGCAATCCATTCACTTTTGA
TCCGGCCACCGCCAAAAAAATTCTGGCTAAAGCGGGCATTAAAGATGCCACACTGACACTGGATGTTGAGAACAAACCCC
CGTTTATCACCATTGCTCAGTCGTTACAGGCCAGCTTTGCGCAGGGGGGGTGA

Upstream 100 bases:

>100_bases
AGCTGCGGTGAAATAAATAAAAAAACACTCATTTTCTATCGATGTTAACTACTTAATACTAGAAACACGCGATGGCGGTA
ATCTATTCTTGGGAGTCTCA

Downstream 100 bases:

>100_bases
AACTGGTATTGCTGCCAGCAGCAGGTAGCCAAGTTTATGGTCGGGTGCGGGCTAAACAGCATCAATCGGCGATTCGCCTG
TGGATCCCGGATTATTTCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 390; Mature: 390

Protein sequence:

>390_residues
MKAKVLSLFVLAALSGGTLAATPPDTLIVVQSLDDIVSLDPAESNELSSIQTVPSLYQRLVQADRDNPAKVVPVLAESWE
GDAAAKTLTVKLRPQAVFASGNPVQADDVIYSFTRAVKMNRSPAFILNVLGWQADNIDQHLKKIDNNTVQVSWSADVSPA
VALNILSTPIASIVDKKTVTANTKDDDYGNAWLKMHSAGSGAFKMRVYQPHQAIVLDANPTSPGNQPLIKNIIIKNVPDP
SARRLLIQQGDADIARELGPDQITALKTQAGVKVVEIPSAEQNYLVFNTANAANPLLSRPELWQAARYLVDYQGITKDLL
KDQYFIHQSFLPVGLPGALASNPFTFDPATAKKILAKAGIKDATLTLDVENKPPFITIAQSLQASFAQGG

Sequences:

>Translated_390_residues
MKAKVLSLFVLAALSGGTLAATPPDTLIVVQSLDDIVSLDPAESNELSSIQTVPSLYQRLVQADRDNPAKVVPVLAESWE
GDAAAKTLTVKLRPQAVFASGNPVQADDVIYSFTRAVKMNRSPAFILNVLGWQADNIDQHLKKIDNNTVQVSWSADVSPA
VALNILSTPIASIVDKKTVTANTKDDDYGNAWLKMHSAGSGAFKMRVYQPHQAIVLDANPTSPGNQPLIKNIIIKNVPDP
SARRLLIQQGDADIARELGPDQITALKTQAGVKVVEIPSAEQNYLVFNTANAANPLLSRPELWQAARYLVDYQGITKDLL
KDQYFIHQSFLPVGLPGALASNPFTFDPATAKKILAKAGIKDATLTLDVENKPPFITIAQSLQASFAQGG
>Mature_390_residues
MKAKVLSLFVLAALSGGTLAATPPDTLIVVQSLDDIVSLDPAESNELSSIQTVPSLYQRLVQADRDNPAKVVPVLAESWE
GDAAAKTLTVKLRPQAVFASGNPVQADDVIYSFTRAVKMNRSPAFILNVLGWQADNIDQHLKKIDNNTVQVSWSADVSPA
VALNILSTPIASIVDKKTVTANTKDDDYGNAWLKMHSAGSGAFKMRVYQPHQAIVLDANPTSPGNQPLIKNIIIKNVPDP
SARRLLIQQGDADIARELGPDQITALKTQAGVKVVEIPSAEQNYLVFNTANAANPLLSRPELWQAARYLVDYQGITKDLL
KDQYFIHQSFLPVGLPGALASNPFTFDPATAKKILAKAGIKDATLTLDVENKPPFITIAQSLQASFAQGG

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787762, Length=379, Percent_Identity=33.245382585752, Blast_Score=145, Evalue=7e-36,
Organism=Escherichia coli, GI1789966, Length=359, Percent_Identity=26.4623955431755, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1787551, Length=416, Percent_Identity=24.0384615384615, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787052, Length=370, Percent_Identity=23.7837837837838, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1789887, Length=365, Percent_Identity=25.2054794520548, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1787495, Length=252, Percent_Identity=28.5714285714286, Blast_Score=62, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 41979; Mature: 41979

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAKVLSLFVLAALSGGTLAATPPDTLIVVQSLDDIVSLDPAESNELSSIQTVPSLYQRL
CCHHHHHHHHHHHHCCCEEECCCCCCEEEEECHHHHHCCCCCCCCCHHHHHHHHHHHHHH
VQADRDNPAKVVPVLAESWEGDAAAKTLTVKLRPQAVFASGNPVQADDVIYSFTRAVKMN
HHCCCCCCCEEEEHHHCCCCCCCCEEEEEEEEECEEEEECCCCCCHHHHHHHHHHHHHCC
RSPAFILNVLGWQADNIDQHLKKIDNNTVQVSWSADVSPAVALNILSTPIASIVDKKTVT
CCCCEEEEECCCCCCCHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEE
ANTKDDDYGNAWLKMHSAGSGAFKMRVYQPHQAIVLDANPTSPGNQPLIKNIIIKNVPDP
CCCCCCCCCCEEEEEECCCCCEEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHCCCCCH
SARRLLIQQGDADIARELGPDQITALKTQAGVKVVEIPSAEQNYLVFNTANAANPLLSRP
HHHEEEEECCCHHHHHHCCCCHHEEEHHHCCEEEEECCCCCCCEEEEECCCCCCCCCCCH
ELWQAARYLVDYQGITKDLLKDQYFIHQSFLPVGLPGALASNPFTFDPATAKKILAKAGI
HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCEECCHHHHHHHHHCCC
KDATLTLDVENKPPFITIAQSLQASFAQGG
CCEEEEEEECCCCCEEEEHHHHHHHHCCCC
>Mature Secondary Structure
MKAKVLSLFVLAALSGGTLAATPPDTLIVVQSLDDIVSLDPAESNELSSIQTVPSLYQRL
CCHHHHHHHHHHHHCCCEEECCCCCCEEEEECHHHHHCCCCCCCCCHHHHHHHHHHHHHH
VQADRDNPAKVVPVLAESWEGDAAAKTLTVKLRPQAVFASGNPVQADDVIYSFTRAVKMN
HHCCCCCCCEEEEHHHCCCCCCCCEEEEEEEEECEEEEECCCCCCHHHHHHHHHHHHHCC
RSPAFILNVLGWQADNIDQHLKKIDNNTVQVSWSADVSPAVALNILSTPIASIVDKKTVT
CCCCEEEEECCCCCCCHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEE
ANTKDDDYGNAWLKMHSAGSGAFKMRVYQPHQAIVLDANPTSPGNQPLIKNIIIKNVPDP
CCCCCCCCCCEEEEEECCCCCEEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHCCCCCH
SARRLLIQQGDADIARELGPDQITALKTQAGVKVVEIPSAEQNYLVFNTANAANPLLSRP
HHHEEEEECCCHHHHHHCCCCHHEEEHHHCCEEEEECCCCCCCEEEEECCCCCCCCCCCH
ELWQAARYLVDYQGITKDLLKDQYFIHQSFLPVGLPGALASNPFTFDPATAKKILAKAGI
HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCEECCHHHHHHHHHCCC
KDATLTLDVENKPPFITIAQSLQASFAQGG
CCEEEEEEECCCCCEEEEHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]