| Definition | Yersinia pestis Nepal516, complete genome. |
|---|---|
| Accession | NC_008149 |
| Length | 4,534,590 |
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The map label for this gene is 108810779
Identifier: 108810779
GI number: 108810779
Start: 726384
End: 727607
Strand: Reverse
Name: 108810779
Synonym: YPN_0614
Alternate gene names: NA
Gene position: 727607-726384 (Counterclockwise)
Preceding gene: 108810787
Following gene: 108810778
Centisome position: 16.05
GC content: 44.36
Gene sequence:
>1224_bases ATGATGCTAAACTCTGGTGCTAAAAACCTATTACTGACTATTCTGTTGGGTACATCTCCCTTTATTTATGCTGCAGAAAG TCATCCGTTGTTATTAAAAATGGACGATATTAACTACAGCATTGAACAGATTAAACAAAACAACCCGTTATATGAAAAAT CTTATAAAAATCTGATGGCTAAGGCCGACAAGGCACTAAAAAAACCACTGTACTCCGTCATGGATAAAAGCCTCTTGGCC GCCAGTGGTGATAAACACGACTATTACAGCTTCCCACCTTATTGGTGGCCAGATCCAAGCAAGAAAGACGGTATGCCTTA TTTACGTAAGGATGGGGAAACAAATCCTGCGGCCAACAGTGATGCCACCGATAAAAAGCGCATGAACAGCTTCAGTGAAG ACGTCTATTATCTGGCGTTGGCTTATAGCTTTACCGGTAAGCCTGAGTATGCCCAAAAAGCGCATGAACAATTGGTCAAT TGGTTCGTGAATCCAGAGACTAAAATGAATCCAAATCTGCAATATGCGCAGGCCATTCCGGGGATTAACGAAGGCCGAGG TATTGGTTTGATCGATAGCCGGGCGCTAGTTGATGTGATTGATGCCGTTGAATTGATCAGACCCGCCAATGTTCTCAGTG ACAACGACTATCAGGCCATTAAAAGTTGGTATGGTGATTTTTATCAATGGATGACCACCAGCCAAAATGGTTTCGAAGAA GATAACTGGCACAATAACCACGGCACCTATTTTGATATGCAGGCGGCCTCTTTTGCCCTGTTCAGCGATCAAAAAGCCGC TGCACAGAAACGTTTGGAAATCACGCAATTACGCCGTATTCCCTCACATTTTGATATGCAAGGCCGACAAAATGCCGAGC TGGAGCGCACCCGCCCATGGCATTACAGTAACTTCCATCTAGAGGCCTACAATAAATTGGGCCGTCTTGGGGAGGTTGGC GAGAAAGATATCTGGGATTTCAGTCTGGATGAGCACAGCCTGAAAAAAGGCTATCAGTACGTTGCCGGTTTCATCAATAC CGACCAAGCCTGGCCGTATAAAGATCTGGATGGAGTACAGGATAAAAAAGCCTTGGTCAATATGATTACCGCCGCTCGCG CCTACCCTGCTGACGTTGAATTCCAACAAAAAGCACAATACCTGATAGCAAAATACCCAGATACCGTTGAAATCTTACTT TACCCAATCACAACGCAAAAATAA
Upstream 100 bases:
>100_bases TTATAAATAAGCACAATTTTTATTTAAAAAATGAGTGTTCAATATATTAAATTAATAATTTTTTATTTACACCGTTTAAT CCATAAAAATAAGGAAAGTG
Downstream 100 bases:
>100_bases GCATCGCCGAGGACACGCCAGATATGAAGCAGTTTACGGATCGGCAGATGGTTAAAATCCGCCAGCGCGTTGTGAAACAA CCGGAGATTATTGCCACGCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 407; Mature: 407
Protein sequence:
>407_residues MMLNSGAKNLLLTILLGTSPFIYAAESHPLLLKMDDINYSIEQIKQNNPLYEKSYKNLMAKADKALKKPLYSVMDKSLLA ASGDKHDYYSFPPYWWPDPSKKDGMPYLRKDGETNPAANSDATDKKRMNSFSEDVYYLALAYSFTGKPEYAQKAHEQLVN WFVNPETKMNPNLQYAQAIPGINEGRGIGLIDSRALVDVIDAVELIRPANVLSDNDYQAIKSWYGDFYQWMTTSQNGFEE DNWHNNHGTYFDMQAASFALFSDQKAAAQKRLEITQLRRIPSHFDMQGRQNAELERTRPWHYSNFHLEAYNKLGRLGEVG EKDIWDFSLDEHSLKKGYQYVAGFINTDQAWPYKDLDGVQDKKALVNMITAARAYPADVEFQQKAQYLIAKYPDTVEILL YPITTQK
Sequences:
>Translated_407_residues MMLNSGAKNLLLTILLGTSPFIYAAESHPLLLKMDDINYSIEQIKQNNPLYEKSYKNLMAKADKALKKPLYSVMDKSLLA ASGDKHDYYSFPPYWWPDPSKKDGMPYLRKDGETNPAANSDATDKKRMNSFSEDVYYLALAYSFTGKPEYAQKAHEQLVN WFVNPETKMNPNLQYAQAIPGINEGRGIGLIDSRALVDVIDAVELIRPANVLSDNDYQAIKSWYGDFYQWMTTSQNGFEE DNWHNNHGTYFDMQAASFALFSDQKAAAQKRLEITQLRRIPSHFDMQGRQNAELERTRPWHYSNFHLEAYNKLGRLGEVG EKDIWDFSLDEHSLKKGYQYVAGFINTDQAWPYKDLDGVQDKKALVNMITAARAYPADVEFQQKAQYLIAKYPDTVEILL YPITTQK >Mature_407_residues MMLNSGAKNLLLTILLGTSPFIYAAESHPLLLKMDDINYSIEQIKQNNPLYEKSYKNLMAKADKALKKPLYSVMDKSLLA ASGDKHDYYSFPPYWWPDPSKKDGMPYLRKDGETNPAANSDATDKKRMNSFSEDVYYLALAYSFTGKPEYAQKAHEQLVN WFVNPETKMNPNLQYAQAIPGINEGRGIGLIDSRALVDVIDAVELIRPANVLSDNDYQAIKSWYGDFYQWMTTSQNGFEE DNWHNNHGTYFDMQAASFALFSDQKAAAQKRLEITQLRRIPSHFDMQGRQNAELERTRPWHYSNFHLEAYNKLGRLGEVG EKDIWDFSLDEHSLKKGYQYVAGFINTDQAWPYKDLDGVQDKKALVNMITAARAYPADVEFQQKAQYLIAKYPDTVEILL YPITTQK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46739; Mature: 46739
Theoretical pI: Translated: 6.07; Mature: 6.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMLNSGAKNLLLTILLGTSPFIYAAESHPLLLKMDDINYSIEQIKQNNPLYEKSYKNLMA CCCCCCCHHEEEEEEECCCCEEEEECCCCEEEEECCCCCHHHHHHCCCCHHHHHHHHHHH KADKALKKPLYSVMDKSLLAASGDKHDYYSFPPYWWPDPSKKDGMPYLRKDGETNPAANS HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCC DATDKKRMNSFSEDVYYLALAYSFTGKPEYAQKAHEQLVNWFVNPETKMNPNLQYAQAIP CCHHHHHHHHHHHCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCC GINEGRGIGLIDSRALVDVIDAVELIRPANVLSDNDYQAIKSWYGDFYQWMTTSQNGFEE CCCCCCCCCEECCHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCC DNWHNNHGTYFDMQAASFALFSDQKAAAQKRLEITQLRRIPSHFDMQGRQNAELERTRPW CCCCCCCCCEEEECHHHEEHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC HYSNFHLEAYNKLGRLGEVGEKDIWDFSLDEHSLKKGYQYVAGFINTDQAWPYKDLDGVQ CCCCEEHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH DKKALVNMITAARAYPADVEFQQKAQYLIAKYPDTVEILLYPITTQK HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCC >Mature Secondary Structure MMLNSGAKNLLLTILLGTSPFIYAAESHPLLLKMDDINYSIEQIKQNNPLYEKSYKNLMA CCCCCCCHHEEEEEEECCCCEEEEECCCCEEEEECCCCCHHHHHHCCCCHHHHHHHHHHH KADKALKKPLYSVMDKSLLAASGDKHDYYSFPPYWWPDPSKKDGMPYLRKDGETNPAANS HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCC DATDKKRMNSFSEDVYYLALAYSFTGKPEYAQKAHEQLVNWFVNPETKMNPNLQYAQAIP CCHHHHHHHHHHHCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCC GINEGRGIGLIDSRALVDVIDAVELIRPANVLSDNDYQAIKSWYGDFYQWMTTSQNGFEE CCCCCCCCCEECCHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCC DNWHNNHGTYFDMQAASFALFSDQKAAAQKRLEITQLRRIPSHFDMQGRQNAELERTRPW CCCCCCCCCEEEECHHHEEHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC HYSNFHLEAYNKLGRLGEVGEKDIWDFSLDEHSLKKGYQYVAGFINTDQAWPYKDLDGVQ CCCCEEHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH DKKALVNMITAARAYPADVEFQQKAQYLIAKYPDTVEILLYPITTQK HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA