| Definition | Yersinia pestis Nepal516, complete genome. |
|---|---|
| Accession | NC_008149 |
| Length | 4,534,590 |
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The map label for this gene is 108810636
Identifier: 108810636
GI number: 108810636
Start: 576701
End: 578080
Strand: Reverse
Name: 108810636
Synonym: YPN_0471
Alternate gene names: NA
Gene position: 578080-576701 (Counterclockwise)
Preceding gene: 108810645
Following gene: 108810635
Centisome position: 12.75
GC content: 48.04
Gene sequence:
>1380_bases ATGATTAATAAAAGAAAAATTGTCCTCGCCGCTATATTACTCACGGTTAACGGCGGCTTGTTCGCCCAGAGCGTCGTGAT TGATCAATTAAAAGTTTCTGAGCATCTTTATCCAAAGGGATTTGAATCCGAATTTCAGAATAACCTCGATTTCTATCGTG ACGGTGTTGGTGTCGATGAGAAGGCCAAAGTGCCTTACGATACGATCCGTATTGAAGGTACTGAAATTGTTAAAGGTTAT TATACCAACACCACCGAGGTGGGGTTGTATCTCAATATATTAACCGAGTCGGTAAAAGCCGGTAACCTGCAGGCGTTACA ACGAATTAAAGAGACATTAACCACCTTGGAGCAGGCCCCCAAATGGAACGGGTTATTTTACTGGCCCTATGATATCCGCG ACGGCAAGCTGGTGACCAATCCCGATGAAATCGTACCTGCGGTGGATAACGGTAATCTCTCGTTCGCACTGGCGGGGGTT GCGGGTGCATTTCTAGATTCGAGCGATGCGGACAAGCAAGAGATCGTGCAACGCATTGAGGCGATACTGGACGGACAGAA ACCAGGCTGGGCCGCCCTGTACGATGAAAATAAAGGTCTGCTCTCCTCTGGTTGGTCGACAAAAAACAATGCGTCACTGG GCTACTTCGTTGATCGCAAGGGCAATGAAAGCCGTGCGGCGGTGGCCTGGGCGGTGCTGGCGACTAAAGATATGGGAGCC AAAGCATTACCGGTTAGCGCGTTCAGTAAAATGGAGCTCTACACCCAACGCTATGAAATAAACGGCAAGCAATACAACCC GCTGCTGACCTGGGATGGCGCTTATTTCCAGATGATGATGCCGCAAATATGGCTGAATGAGCGTGAACTGATGCCTAACT ACGGCATTGTCGAGGATCACACCTTTATTCAAAAAGTCTATGCCAGCAAGCATGGCATTCCAATGGTTTCTTCCTCCGCT ACCACGGATAACGCTTACCACGCCTTCGGTGTGCCACAGCTTTCCGAGAGCAAAGTTCGCTTCAAGAATAAGATCGATGA TGGCTATACCGGTACGCCGCACGCAATAGCGCTCTCCTATATCGTCGATCCTGCCGGAGCGATCAGCGCATTAAAGAAAC TGAAACAGGCTTATCCGAATATCGAATCCCCGTATGGCTGGTATGACGCTGTCGATAGCAGCGGCAAGATCTCAAAAAAT ATCCTTTCCCTTGATGTCGGCATGTTTGTTGGTGCTTTTCTGGCGAAAGAGATCAATGCCGATGTTGAAAAATACCTACA AAGCAAGGGCGATATGGAATTGCTAAAAGAGATGTATCAGTCCTACGTTCCCAATAATTACAAACCATTGGATGGTCTCT CCAGCTCTTCTCTGCACTGA
Upstream 100 bases:
>100_bases CTGTTAATGCGGTTGACTCACGTTGTTTATTACGCAGATTATAGAAACGTTTCTATTGAATGGTTTTTAACCTAAAGTCA GGCTTATAAGGCATATTTAC
Downstream 100 bases:
>100_bases TGACTACCGACACCCAATTACCCTAATACCACCTCTCGGTTCACCAGAGCAGAGGATGGCATTGCCCCCCATTTCGCGAT GATAGAATAAGGATTACAGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 459; Mature: 459
Protein sequence:
>459_residues MINKRKIVLAAILLTVNGGLFAQSVVIDQLKVSEHLYPKGFESEFQNNLDFYRDGVGVDEKAKVPYDTIRIEGTEIVKGY YTNTTEVGLYLNILTESVKAGNLQALQRIKETLTTLEQAPKWNGLFYWPYDIRDGKLVTNPDEIVPAVDNGNLSFALAGV AGAFLDSSDADKQEIVQRIEAILDGQKPGWAALYDENKGLLSSGWSTKNNASLGYFVDRKGNESRAAVAWAVLATKDMGA KALPVSAFSKMELYTQRYEINGKQYNPLLTWDGAYFQMMMPQIWLNERELMPNYGIVEDHTFIQKVYASKHGIPMVSSSA TTDNAYHAFGVPQLSESKVRFKNKIDDGYTGTPHAIALSYIVDPAGAISALKKLKQAYPNIESPYGWYDAVDSSGKISKN ILSLDVGMFVGAFLAKEINADVEKYLQSKGDMELLKEMYQSYVPNNYKPLDGLSSSSLH
Sequences:
>Translated_459_residues MINKRKIVLAAILLTVNGGLFAQSVVIDQLKVSEHLYPKGFESEFQNNLDFYRDGVGVDEKAKVPYDTIRIEGTEIVKGY YTNTTEVGLYLNILTESVKAGNLQALQRIKETLTTLEQAPKWNGLFYWPYDIRDGKLVTNPDEIVPAVDNGNLSFALAGV AGAFLDSSDADKQEIVQRIEAILDGQKPGWAALYDENKGLLSSGWSTKNNASLGYFVDRKGNESRAAVAWAVLATKDMGA KALPVSAFSKMELYTQRYEINGKQYNPLLTWDGAYFQMMMPQIWLNERELMPNYGIVEDHTFIQKVYASKHGIPMVSSSA TTDNAYHAFGVPQLSESKVRFKNKIDDGYTGTPHAIALSYIVDPAGAISALKKLKQAYPNIESPYGWYDAVDSSGKISKN ILSLDVGMFVGAFLAKEINADVEKYLQSKGDMELLKEMYQSYVPNNYKPLDGLSSSSLH >Mature_459_residues MINKRKIVLAAILLTVNGGLFAQSVVIDQLKVSEHLYPKGFESEFQNNLDFYRDGVGVDEKAKVPYDTIRIEGTEIVKGY YTNTTEVGLYLNILTESVKAGNLQALQRIKETLTTLEQAPKWNGLFYWPYDIRDGKLVTNPDEIVPAVDNGNLSFALAGV AGAFLDSSDADKQEIVQRIEAILDGQKPGWAALYDENKGLLSSGWSTKNNASLGYFVDRKGNESRAAVAWAVLATKDMGA KALPVSAFSKMELYTQRYEINGKQYNPLLTWDGAYFQMMMPQIWLNERELMPNYGIVEDHTFIQKVYASKHGIPMVSSSA TTDNAYHAFGVPQLSESKVRFKNKIDDGYTGTPHAIALSYIVDPAGAISALKKLKQAYPNIESPYGWYDAVDSSGKISKN ILSLDVGMFVGAFLAKEINADVEKYLQSKGDMELLKEMYQSYVPNNYKPLDGLSSSSLH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50969; Mature: 50969
Theoretical pI: Translated: 5.34; Mature: 5.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MINKRKIVLAAILLTVNGGLFAQSVVIDQLKVSEHLYPKGFESEFQNNLDFYRDGVGVDE CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCHHHHCCCCCCC KAKVPYDTIRIEGTEIVKGYYTNTTEVGLYLNILTESVKAGNLQALQRIKETLTTLEQAP CCCCCCEEEEECCEEEEEEEECCCCCHHEEEEEHHHHHCCCCHHHHHHHHHHHHHHHHCC KWNGLFYWPYDIRDGKLVTNPDEIVPAVDNGNLSFALAGVAGAFLDSSDADKQEIVQRIE CCCCEEEEEEECCCCEEECCHHHHEEEECCCCEEEEEHHHHHHHCCCCCCCHHHHHHHHH AILDGQKPGWAALYDENKGLLSSGWSTKNNASLGYFVDRKGNESRAAVAWAVLATKDMGA HHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHEEEEEEEHHCCCC KALPVSAFSKMELYTQRYEINGKQYNPLLTWDGAYFQMMMPQIWLNERELMPNYGIVEDH CCCCHHHHHHHHHHHHHHCCCCCEECCEEEECCHHHHHHHHHHHCCCHHCCCCCCCCCCH TFIQKVYASKHGIPMVSSSATTDNAYHAFGVPQLSESKVRFKNKIDDGYTGTPHAIALSY HHHHHHHHHCCCCCEEECCCCCCCCEEECCCCCCCCCHHHHHHCCCCCCCCCCHHEEEEE IVDPAGAISALKKLKQAYPNIESPYGWYDAVDSSGKISKNILSLDVGMFVGAFLAKEINA HCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCH DVEKYLQSKGDMELLKEMYQSYVPNNYKPLDGLSSSSLH HHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC >Mature Secondary Structure MINKRKIVLAAILLTVNGGLFAQSVVIDQLKVSEHLYPKGFESEFQNNLDFYRDGVGVDE CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCHHHHCCCCCCC KAKVPYDTIRIEGTEIVKGYYTNTTEVGLYLNILTESVKAGNLQALQRIKETLTTLEQAP CCCCCCEEEEECCEEEEEEEECCCCCHHEEEEEHHHHHCCCCHHHHHHHHHHHHHHHHCC KWNGLFYWPYDIRDGKLVTNPDEIVPAVDNGNLSFALAGVAGAFLDSSDADKQEIVQRIE CCCCEEEEEEECCCCEEECCHHHHEEEECCCCEEEEEHHHHHHHCCCCCCCHHHHHHHHH AILDGQKPGWAALYDENKGLLSSGWSTKNNASLGYFVDRKGNESRAAVAWAVLATKDMGA HHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHEEEEEEEHHCCCC KALPVSAFSKMELYTQRYEINGKQYNPLLTWDGAYFQMMMPQIWLNERELMPNYGIVEDH CCCCHHHHHHHHHHHHHHCCCCCEECCEEEECCHHHHHHHHHHHCCCHHCCCCCCCCCCH TFIQKVYASKHGIPMVSSSATTDNAYHAFGVPQLSESKVRFKNKIDDGYTGTPHAIALSY HHHHHHHHHCCCCCEEECCCCCCCCEEECCCCCCCCCHHHHHHCCCCCCCCCCHHEEEEE IVDPAGAISALKKLKQAYPNIESPYGWYDAVDSSGKISKNILSLDVGMFVGAFLAKEINA HCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCH DVEKYLQSKGDMELLKEMYQSYVPNNYKPLDGLSSSSLH HHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA