| Definition | Yersinia pestis Nepal516, complete genome. |
|---|---|
| Accession | NC_008149 |
| Length | 4,534,590 |
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The map label for this gene is 108810333
Identifier: 108810333
GI number: 108810333
Start: 209878
End: 210486
Strand: Reverse
Name: 108810333
Synonym: YPN_0167
Alternate gene names: NA
Gene position: 210486-209878 (Counterclockwise)
Preceding gene: 108810341
Following gene: 108810332
Centisome position: 4.64
GC content: 40.23
Gene sequence:
>609_bases ATGTCGCGTAATTATTTAACACCCTCATTTTATATTACGCCACCAACATCAACCCTAATAAATCACAATGCCATTCCATT TTGGATGGGTTTTTACATAAAGGACTATCAGGTATTTATGATGAAGAAAACTGTTATTGCTATTATCACTATGGCCACAT TGACCAGCACTGCGGCTTATGCAAACACAATAGAGAAAGATATTCGTGTTGAAGCAGAAATTATTTCTCTCATGGACGTG AAGAGAGCTGATGATAGCAATATTAATAAAATAAAATTAACCTATGACACGGTAACGAATGATGGTACGTATAGCCATTC AGAAGCAATTAAAGTAAAAGCACGTAAACAACTCGGAGATAAGCTAAAAGTGTCTCTTGCCGCACCGGTTATCTTAAGCG AGCCAAATAACAATAAAGAGTTTACTCACGTTGAAGTATTGTTAGATGGGAAGAAGCTGCTTGAGACGGCCGACACACGA GACCTGATTGCCTTCCATGGCTCTGAGCTCAACGCAGAACTAAAAGTCAGCGCCAAAGAGCCTAATAATGCCGTCGGTGG TGAAAAGTATAGCGGGGTAATTCAATTGCGCCTGGAGCCAAGCGCTTAA
Upstream 100 bases:
>100_bases GGTGATATAAATTAAAATCATTCAGACAAAATGGTATAATTACCACTTGAAATAACGTTATTTGTCATGTTAGTGTTCGC CCCGGTTTGTGACGGGCATA
Downstream 100 bases:
>100_bases TTTAGTTTGTTTCAATACAGTTTGTTAATTTAATGAATACAGCCATGGAATTATCTCCTGGCTGTATATATCTGTCATAC TTCAAGCTGCATGTGCGTTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 202; Mature: 201
Protein sequence:
>202_residues MSRNYLTPSFYITPPTSTLINHNAIPFWMGFYIKDYQVFMMKKTVIAIITMATLTSTAAYANTIEKDIRVEAEIISLMDV KRADDSNINKIKLTYDTVTNDGTYSHSEAIKVKARKQLGDKLKVSLAAPVILSEPNNNKEFTHVEVLLDGKKLLETADTR DLIAFHGSELNAELKVSAKEPNNAVGGEKYSGVIQLRLEPSA
Sequences:
>Translated_202_residues MSRNYLTPSFYITPPTSTLINHNAIPFWMGFYIKDYQVFMMKKTVIAIITMATLTSTAAYANTIEKDIRVEAEIISLMDV KRADDSNINKIKLTYDTVTNDGTYSHSEAIKVKARKQLGDKLKVSLAAPVILSEPNNNKEFTHVEVLLDGKKLLETADTR DLIAFHGSELNAELKVSAKEPNNAVGGEKYSGVIQLRLEPSA >Mature_201_residues SRNYLTPSFYITPPTSTLINHNAIPFWMGFYIKDYQVFMMKKTVIAIITMATLTSTAAYANTIEKDIRVEAEIISLMDVK RADDSNINKIKLTYDTVTNDGTYSHSEAIKVKARKQLGDKLKVSLAAPVILSEPNNNKEFTHVEVLLDGKKLLETADTRD LIAFHGSELNAELKVSAKEPNNAVGGEKYSGVIQLRLEPSA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22485; Mature: 22354
Theoretical pI: Translated: 7.80; Mature: 7.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRNYLTPSFYITPPTSTLINHNAIPFWMGFYIKDYQVFMMKKTVIAIITMATLTSTAAY CCCCCCCCEEEECCCCHHHHCCCCCCEEEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHH ANTIEKDIRVEAEIISLMDVKRADDSNINKIKLTYDTVTNDGTYSHSEAIKVKARKQLGD HHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEHHHCCC KLKVSLAAPVILSEPNNNKEFTHVEVLLDGKKLLETADTRDLIAFHGSELNAELKVSAKE EEEEEEECCEEEECCCCCCCEEEEEEEECCHHHHHCCCCCEEEEECCCCCCEEEEEEECC PNNAVGGEKYSGVIQLRLEPSA CCCCCCCCCCCCEEEEEECCCC >Mature Secondary Structure SRNYLTPSFYITPPTSTLINHNAIPFWMGFYIKDYQVFMMKKTVIAIITMATLTSTAAY CCCCCCCEEEECCCCHHHHCCCCCCEEEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHH ANTIEKDIRVEAEIISLMDVKRADDSNINKIKLTYDTVTNDGTYSHSEAIKVKARKQLGD HHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEHHHCCC KLKVSLAAPVILSEPNNNKEFTHVEVLLDGKKLLETADTRDLIAFHGSELNAELKVSAKE EEEEEEECCEEEECCCCCCCEEEEEEEECCHHHHHCCCCCEEEEECCCCCCEEEEEEECC PNNAVGGEKYSGVIQLRLEPSA CCCCCCCCCCCCEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA