Click here to switch to the map view.

The map label for this gene is ecpD [H]

Identifier: 108810252

GI number: 108810252

Start: 119835

End: 120566

Strand: Reverse

Name: ecpD [H]

Synonym: YPN_0086

Alternate gene names: 108810252

Gene position: 120566-119835 (Counterclockwise)

Preceding gene: 108810253

Following gene: 108810251

Centisome position: 2.66

GC content: 42.21

Gene sequence:

>732_bases
ATGCTTAGTATATATGCCCGCCACTATCATTATCTGTTTGTAACTTTATTAGTGGCTATGAGTCTGTCTTTTGCTAATGC
CAGTGTCGTGATGACAGGGAGTCGCATCATATATCCTGCGGCGGCAAGCGAGCACAGCATACAGTTAACCAATAATGACA
ATTTCCCTAATGCTGTTCAGGTGTGGTTAGACAGTGGCGATGAAAAATCGACACCAGAAACAGGCAAAGCCCCCTTTATA
GTGACTCCACCGTTCTTTCGTATTGAAGCAAATTCTGGCCAAACATTACGGTTAAAATATACGGGAAGTGGCCTTCCTAC
AGATAGGGAATCCGTATTTTATCTTAACTTTTTACAGATCCCTCCCGTCAATAAAGTAGAGAAAGATAACAAGATGTTAG
TGCTGTTGCGTAACCGCATTAAAGTATTTTATCGTCCCGAGAGTATTATCGGCCGTGTTGACCAAGTCTCTACCGCATTG
ACTTTTAGTCTACGAAAACAAGGAACTAACCTTGTTTTGACAGGAAAAAACCCAACTGGATTCTATGCCACAATTGCCAG
TGGTGAAATCGTGAGTGGGAGCATAAAACTTAAAGTAAAATCAAATATGATCGCGCCTATGTCTCAAGTTGAGTGGGTGA
TCCCAAATGCATCCGTATCCTCGTCAGCAACGATTAACTTTCTGATCATGAATGATTTCGGCGGGCAAGATGCCGGTAGC
TATCGTATTTAG

Upstream 100 bases:

>100_bases
CATTGCATCTGTACAGTATGCCGTTTCTTACTTGTAATAAATGTATTTATTACCGGGTGGTATACCCACTCGGTAAATGA
CTTCAGAAGGTACGCTCATC

Downstream 100 bases:

>100_bases
CAGTAACTTTCCGGTAAAGGAATATTTATGGTGCAGGCACGGGTCATTCTGAAAAAAAATTTCTCAGGCCGTAGGAAAGC
ATTAACATTATGTATAACTT

Product: fimbrial chaperone

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MLSIYARHYHYLFVTLLVAMSLSFANASVVMTGSRIIYPAAASEHSIQLTNNDNFPNAVQVWLDSGDEKSTPETGKAPFI
VTPPFFRIEANSGQTLRLKYTGSGLPTDRESVFYLNFLQIPPVNKVEKDNKMLVLLRNRIKVFYRPESIIGRVDQVSTAL
TFSLRKQGTNLVLTGKNPTGFYATIASGEIVSGSIKLKVKSNMIAPMSQVEWVIPNASVSSSATINFLIMNDFGGQDAGS
YRI

Sequences:

>Translated_243_residues
MLSIYARHYHYLFVTLLVAMSLSFANASVVMTGSRIIYPAAASEHSIQLTNNDNFPNAVQVWLDSGDEKSTPETGKAPFI
VTPPFFRIEANSGQTLRLKYTGSGLPTDRESVFYLNFLQIPPVNKVEKDNKMLVLLRNRIKVFYRPESIIGRVDQVSTAL
TFSLRKQGTNLVLTGKNPTGFYATIASGEIVSGSIKLKVKSNMIAPMSQVEWVIPNASVSSSATINFLIMNDFGGQDAGS
YRI
>Mature_243_residues
MLSIYARHYHYLFVTLLVAMSLSFANASVVMTGSRIIYPAAASEHSIQLTNNDNFPNAVQVWLDSGDEKSTPETGKAPFI
VTPPFFRIEANSGQTLRLKYTGSGLPTDRESVFYLNFLQIPPVNKVEKDNKMLVLLRNRIKVFYRPESIIGRVDQVSTAL
TFSLRKQGTNLVLTGKNPTGFYATIASGEIVSGSIKLKVKSNMIAPMSQVEWVIPNASVSSSATINFLIMNDFGGQDAGS
YRI

Specific function: Probably mediates assembly of a pilin [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1786333, Length=237, Percent_Identity=37.9746835443038, Blast_Score=150, Evalue=5e-38,
Organism=Escherichia coli, GI1788428, Length=197, Percent_Identity=37.5634517766497, Blast_Score=128, Evalue=3e-31,
Organism=Escherichia coli, GI1789532, Length=235, Percent_Identity=31.4893617021277, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1790771, Length=227, Percent_Identity=31.2775330396476, Blast_Score=104, Evalue=5e-24,
Organism=Escherichia coli, GI1787171, Length=227, Percent_Identity=25.1101321585903, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1786936, Length=226, Percent_Identity=29.646017699115, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1786743, Length=231, Percent_Identity=30.3030303030303, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI87082203, Length=227, Percent_Identity=29.5154185022026, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788677, Length=215, Percent_Identity=29.7674418604651, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI87081806, Length=240, Percent_Identity=30, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 26809; Mature: 26809

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSIYARHYHYLFVTLLVAMSLSFANASVVMTGSRIIYPAAASEHSIQLTNNDNFPNAVQ
CEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEECCCCCCEEEEECCCCCCCEEE
VWLDSGDEKSTPETGKAPFIVTPPFFRIEANSGQTLRLKYTGSGLPTDRESVFYLNFLQI
EEECCCCCCCCCCCCCCCEEECCCEEEEECCCCCEEEEEECCCCCCCCCCEEEEEEEEEC
PPVNKVEKDNKMLVLLRNRIKVFYRPESIIGRVDQVSTALTFSLRKQGTNLVLTGKNPTG
CCCCCCCCCCCEEEEEECCEEEEECCHHHHCCHHHHHHEEEEEECCCCCEEEEECCCCCC
FYATIASGEIVSGSIKLKVKSNMIAPMSQVEWVIPNASVSSSATINFLIMNDFGGQDAGS
EEEEEECCEEEECEEEEEECCCCCCCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCCCC
YRI
CCC
>Mature Secondary Structure
MLSIYARHYHYLFVTLLVAMSLSFANASVVMTGSRIIYPAAASEHSIQLTNNDNFPNAVQ
CEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEECCCCCCEEEEECCCCCCCEEE
VWLDSGDEKSTPETGKAPFIVTPPFFRIEANSGQTLRLKYTGSGLPTDRESVFYLNFLQI
EEECCCCCCCCCCCCCCCEEECCCEEEEECCCCCEEEEEECCCCCCCCCCEEEEEEEEEC
PPVNKVEKDNKMLVLLRNRIKVFYRPESIIGRVDQVSTALTFSLRKQGTNLVLTGKNPTG
CCCCCCCCCCCEEEEEECCEEEEECCHHHHCCHHHHHHEEEEEECCCCCEEEEECCCCCC
FYATIASGEIVSGSIKLKVKSNMIAPMSQVEWVIPNASVSSSATINFLIMNDFGGQDAGS
EEEEEECCEEEECEEEEEECCCCCCCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCCCC
YRI
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8102362; 8202364; 9278503 [H]