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The map label for this gene is 108810250

Identifier: 108810250

GI number: 108810250

Start: 115796

End: 117175

Strand: Reverse

Name: 108810250

Synonym: YPN_0084

Alternate gene names: NA

Gene position: 117175-115796 (Counterclockwise)

Preceding gene: 108810251

Following gene: 108810249

Centisome position: 2.58

GC content: 49.06

Gene sequence:

>1380_bases
ATGAGAAAAATAATGTTAAGACCAACAAAGCCATTAATATCTTCCGGCATTTCGCAGTCTACCACTGCGGTCTATTGCCG
CCGCCCATATTTTCTTGCTGGGATGACATTACTGATTGGGTTATTTAGCACCTCCGCATGGTCAAACTGCACCCGTATTA
CCGCACAAAATCAGATAAGTTCCAGTGATGGTACCGCCGCTTCATGGTTGGGTTCCAGAGACGATAATAATGGTTCGCTC
AACTTACCCAGTATTGTTGATCTCAGCACCAATGCGAATTTTCAGCCCGATGGCACGTTACTGGCATCAGCAACCTCAGA
CTTTACGACCTTTGCAGTGAATACCGGTTATGCCCTTGACCAGGTCCTCTTTCGCTGTGATGCGGCTGATGTGGATCAGC
TCTATGAGATGTATGCCACTAACGGTGACAGCACTTATGGTGGCAGATATGAAGACGGCACGATTGCAGGCAATGTGTCC
TATGGCTATGCTACTACAGTGATGAATGTGGTTATTCGGTTTACCAACCTGGCAACGGGGGAGTATTACGCTCGTATTTG
GAAAGGCCGACGCTTAACCGGGCTTGATACTGACAGTAGCGGACGGATTTTAGTTAAAGCGAAAAATTTCAGTAATGTGT
ATACCGAGCTATTTCGTATTGATTATGCCCGTAGTGGCGCTAACAATACGCCATCTTATCTCTATGGACGTAGTCAGCCC
AATGCCTATATCGCGTTTAAAGGGCCAGGAATTACTGGCCCGATTGAGGGTACTGACTCGTACTCAAACTGGCCCGGTTG
GTATTCTACCTGGCCTGCATCACTTGGTTTGTACAAATACGTCACATTCCGCCGGACCACTATTTGTGCGGTAAGCAACT
TTACCCCGACGGTCGTGTTACCCAGGATTTCGGTGGCAGAACTGAATAATGGGAATACCAGCTCTGCTGATTTTAATGTG
GATTTTCAGTGCCAGACCGGAATTAACTCTGGCGTGACGGCTGGCACAGTGGCGATGGGATTTTTAGTGCCGGCGGCCAA
TGCAGCCAAAGCTCAGGCGCTGGGGTTAATGAACGGCAACGGGGGAGTAAGCCATTTGGTCTCCGATAACTATGGCGCTG
CTGGCACCGCGGGCGGGGTGGGTATTCGCATCTACCGTAACAATAGCCCGATGTATCTACTGTCAAAAAACGTAACTCAG
ACAGGTAACAATGGGGGGTGGTATGGTATCTTACAGGGCGCACAAGAAACCACAGGCAGCGTAGATGGGGGGAACAGTTA
CACCGAAACTTTCCGTGCTGAGTTAAGCAAAATAAGCGGGCAAACAGTGACCGCCGGAGCAGTGAATGCACATGCGCAAG
TGGTTATCCGTGTCCAATAA

Upstream 100 bases:

>100_bases
GAAAGCAGCGGTGATCAGTGTCAATTACCTTATGCTTTTAATCGCCAGGATACCGAGCAAGATATCATTCATATAACCGC
GAGTTGCCGCCGCTAACCCT

Downstream 100 bases:

>100_bases
TATAATGCTTAGCCGTATCAACCGTAGGCTCCGTGGGTTGCTGCTACTCATGACCACCTGTCGTGTACTGACTCTCCCTG
CGCTGACGATTGGCGTGCTG

Product: hypothetical protein

Products: NA

Alternate protein names: Adhesin MrkD; Fimbriae Usher Protein; Fimbrial Subunit Outer Membrane Protein; Fimbriae; Fimbrial Adhesin; Fimbrial Protein Domain-Containing Protein; Fimbrial Protein

Number of amino acids: Translated: 459; Mature: 459

Protein sequence:

>459_residues
MRKIMLRPTKPLISSGISQSTTAVYCRRPYFLAGMTLLIGLFSTSAWSNCTRITAQNQISSSDGTAASWLGSRDDNNGSL
NLPSIVDLSTNANFQPDGTLLASATSDFTTFAVNTGYALDQVLFRCDAADVDQLYEMYATNGDSTYGGRYEDGTIAGNVS
YGYATTVMNVVIRFTNLATGEYYARIWKGRRLTGLDTDSSGRILVKAKNFSNVYTELFRIDYARSGANNTPSYLYGRSQP
NAYIAFKGPGITGPIEGTDSYSNWPGWYSTWPASLGLYKYVTFRRTTICAVSNFTPTVVLPRISVAELNNGNTSSADFNV
DFQCQTGINSGVTAGTVAMGFLVPAANAAKAQALGLMNGNGGVSHLVSDNYGAAGTAGGVGIRIYRNNSPMYLLSKNVTQ
TGNNGGWYGILQGAQETTGSVDGGNSYTETFRAELSKISGQTVTAGAVNAHAQVVIRVQ

Sequences:

>Translated_459_residues
MRKIMLRPTKPLISSGISQSTTAVYCRRPYFLAGMTLLIGLFSTSAWSNCTRITAQNQISSSDGTAASWLGSRDDNNGSL
NLPSIVDLSTNANFQPDGTLLASATSDFTTFAVNTGYALDQVLFRCDAADVDQLYEMYATNGDSTYGGRYEDGTIAGNVS
YGYATTVMNVVIRFTNLATGEYYARIWKGRRLTGLDTDSSGRILVKAKNFSNVYTELFRIDYARSGANNTPSYLYGRSQP
NAYIAFKGPGITGPIEGTDSYSNWPGWYSTWPASLGLYKYVTFRRTTICAVSNFTPTVVLPRISVAELNNGNTSSADFNV
DFQCQTGINSGVTAGTVAMGFLVPAANAAKAQALGLMNGNGGVSHLVSDNYGAAGTAGGVGIRIYRNNSPMYLLSKNVTQ
TGNNGGWYGILQGAQETTGSVDGGNSYTETFRAELSKISGQTVTAGAVNAHAQVVIRVQ
>Mature_459_residues
MRKIMLRPTKPLISSGISQSTTAVYCRRPYFLAGMTLLIGLFSTSAWSNCTRITAQNQISSSDGTAASWLGSRDDNNGSL
NLPSIVDLSTNANFQPDGTLLASATSDFTTFAVNTGYALDQVLFRCDAADVDQLYEMYATNGDSTYGGRYEDGTIAGNVS
YGYATTVMNVVIRFTNLATGEYYARIWKGRRLTGLDTDSSGRILVKAKNFSNVYTELFRIDYARSGANNTPSYLYGRSQP
NAYIAFKGPGITGPIEGTDSYSNWPGWYSTWPASLGLYKYVTFRRTTICAVSNFTPTVVLPRISVAELNNGNTSSADFNV
DFQCQTGINSGVTAGTVAMGFLVPAANAAKAQALGLMNGNGGVSHLVSDNYGAAGTAGGVGIRIYRNNSPMYLLSKNVTQ
TGNNGGWYGILQGAQETTGSVDGGNSYTETFRAELSKISGQTVTAGAVNAHAQVVIRVQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 49033; Mature: 49033

Theoretical pI: Translated: 8.58; Mature: 8.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKIMLRPTKPLISSGISQSTTAVYCRRPYFLAGMTLLIGLFSTSAWSNCTRITAQNQIS
CCCEEECCCHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCC
SSDGTAASWLGSRDDNNGSLNLPSIVDLSTNANFQPDGTLLASATSDFTTFAVNTGYALD
CCCCCEEHCCCCCCCCCCCEECCEEEEECCCCCCCCCCCEEEECCCCEEEEEEECCHHHH
QVLFRCDAADVDQLYEMYATNGDSTYGGRYEDGTIAGNVSYGYATTVMNVVIRFTNLATG
HHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCC
EYYARIWKGRRLTGLDTDSSGRILVKAKNFSNVYTELFRIDYARSGANNTPSYLYGRSQP
HHHHHHHCCCEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCC
NAYIAFKGPGITGPIEGTDSYSNWPGWYSTWPASLGLYKYVTFRRTTICAVSNFTPTVVL
CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECEEEEEECCCCCEEEE
PRISVAELNNGNTSSADFNVDFQCQTGINSGVTAGTVAMGFLVPAANAAKAQALGLMNGN
CCEEEEECCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCHHEEEEECCC
GGVSHLVSDNYGAAGTAGGVGIRIYRNNSPMYLLSKNVTQTGNNGGWYGILQGAQETTGS
CCEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCCEEEEECCCCCCCCC
VDGGNSYTETFRAELSKISGQTVTAGAVNAHAQVVIRVQ
CCCCCHHHHHHHHHHHHCCCCEEEECEECCEEEEEEEEC
>Mature Secondary Structure
MRKIMLRPTKPLISSGISQSTTAVYCRRPYFLAGMTLLIGLFSTSAWSNCTRITAQNQIS
CCCEEECCCHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCC
SSDGTAASWLGSRDDNNGSLNLPSIVDLSTNANFQPDGTLLASATSDFTTFAVNTGYALD
CCCCCEEHCCCCCCCCCCCEECCEEEEECCCCCCCCCCCEEEECCCCEEEEEEECCHHHH
QVLFRCDAADVDQLYEMYATNGDSTYGGRYEDGTIAGNVSYGYATTVMNVVIRFTNLATG
HHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCC
EYYARIWKGRRLTGLDTDSSGRILVKAKNFSNVYTELFRIDYARSGANNTPSYLYGRSQP
HHHHHHHCCCEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCC
NAYIAFKGPGITGPIEGTDSYSNWPGWYSTWPASLGLYKYVTFRRTTICAVSNFTPTVVL
CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECEEEEEECCCCCEEEE
PRISVAELNNGNTSSADFNVDFQCQTGINSGVTAGTVAMGFLVPAANAAKAQALGLMNGN
CCEEEEECCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCHHEEEEECCC
GGVSHLVSDNYGAAGTAGGVGIRIYRNNSPMYLLSKNVTQTGNNGGWYGILQGAQETTGS
CCEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCCEEEEECCCCCCCCC
VDGGNSYTETFRAELSKISGQTVTAGAVNAHAQVVIRVQ
CCCCCHHHHHHHHHHHHCCCCEEEECEECCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA