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The map label for this gene is opuBB [H]

Identifier: 108801928

GI number: 108801928

Start: 5255251

End: 5255919

Strand: Reverse

Name: opuBB [H]

Synonym: Mmcs_4965

Alternate gene names: 108801928

Gene position: 5255919-5255251 (Counterclockwise)

Preceding gene: 108801929

Following gene: 108801927

Centisome position: 92.12

GC content: 68.01

Gene sequence:

>669_bases
GTGCGGTACCTGCTGACCCACCTCGACGACCTGTGGGCGCTCACGGTGATCCACCTGCGGCTGTCGCTGATCCCGATCGT
GCTCGGGCTGCTGATCGCGGTGCCGCTCGGGGCGCTGGTGCAGCGCACCACCGCGCTGCGACGGTTGACCACCATCACCG
CCAGCATCATCTTCACGATCCCGTCGCTCGCGCTGTTCGTGGTGCTGCCGCTGATCATCCCGACGCGCATCCTCGACGAG
GCCAACGTGATCGTGGCGCTGACGCTCTACACCGTCGCCCTGCTGGTGCGTGCCGTACCGGAGGCGCTGGACGCGGTCTC
GCCCGCAGTGCTCGACGCGGCCACCGCCGTCGGCTACAAACCGCTCACCCGGATGCTGAAAATCGAACTCCCGCTTGCCG
TTCCGGTACTCATCGCCAGCCTGCGCGTCGTCGCGGTCACCAACATCTCGATGGTGTCGGTCGGCTCGGTCATCGGGGTC
GGCGGGCTCGGCACCTGGTTCACCGAGGGCTATCAGGCCAACAAGAGCGATCAGATCGTGGCGGGCATCATCGCGATCTT
CGTGCTGGCGGTGGTGATCGACACCCTGATCATGCTGATCGGCAAAGCCCTGACCCCCTGGGCCAGGGCCACCCGCCCGG
CCCGGCAGAAGGCGGGGGCGGCCGCGTGA

Upstream 100 bases:

>100_bases
TCGGCGTCGCCGTCGACGAGCACGGTCAGGTGATCGGCGGGGTGCGCGCCGACGACGTGCTCGCCGCGCTCGACCGGCAG
CGGCAGGAGGCCTGAGACCG

Downstream 100 bases:

>100_bases
ACTTCCTGTCCGAGGCGCTGTCGTTCATCTTCACCGCCGCCAACTGGGCCGGCCCGGCAGGGCTGGGCGCGCGCATCGTC
GAACACCTCGAGTACACCGT

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MRYLLTHLDDLWALTVIHLRLSLIPIVLGLLIAVPLGALVQRTTALRRLTTITASIIFTIPSLALFVVLPLIIPTRILDE
ANVIVALTLYTVALLVRAVPEALDAVSPAVLDAATAVGYKPLTRMLKIELPLAVPVLIASLRVVAVTNISMVSVGSVIGV
GGLGTWFTEGYQANKSDQIVAGIIAIFVLAVVIDTLIMLIGKALTPWARATRPARQKAGAAA

Sequences:

>Translated_222_residues
MRYLLTHLDDLWALTVIHLRLSLIPIVLGLLIAVPLGALVQRTTALRRLTTITASIIFTIPSLALFVVLPLIIPTRILDE
ANVIVALTLYTVALLVRAVPEALDAVSPAVLDAATAVGYKPLTRMLKIELPLAVPVLIASLRVVAVTNISMVSVGSVIGV
GGLGTWFTEGYQANKSDQIVAGIIAIFVLAVVIDTLIMLIGKALTPWARATRPARQKAGAAA
>Mature_222_residues
MRYLLTHLDDLWALTVIHLRLSLIPIVLGLLIAVPLGALVQRTTALRRLTTITASIIFTIPSLALFVVLPLIIPTRILDE
ANVIVALTLYTVALLVRAVPEALDAVSPAVLDAATAVGYKPLTRMLKIELPLAVPVLIASLRVVAVTNISMVSVGSVIGV
GGLGTWFTEGYQANKSDQIVAGIIAIFVLAVVIDTLIMLIGKALTPWARATRPARQKAGAAA

Specific function: Involved in a high affinity multicomponent binding- protein-dependent transport system for choline; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1174

COG function: function code E; ABC-type proline/glycine betaine transport systems, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788451, Length=198, Percent_Identity=34.3434343434343, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1788449, Length=203, Percent_Identity=27.5862068965517, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 23534; Mature: 23534

Theoretical pI: Translated: 10.58; Mature: 10.58

Prosite motif: PS50928 ABC_TM1 ; PS00307 LECTIN_LEGUME_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYLLTHLDDLWALTVIHLRLSLIPIVLGLLIAVPLGALVQRTTALRRLTTITASIIFTI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PSLALFVVLPLIIPTRILDEANVIVALTLYTVALLVRAVPEALDAVSPAVLDAATAVGYK
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
PLTRMLKIELPLAVPVLIASLRVVAVTNISMVSVGSVIGVGGLGTWFTEGYQANKSDQIV
HHHHHHHHHCCHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHH
AGIIAIFVLAVVIDTLIMLIGKALTPWARATRPARQKAGAAA
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHCCCCCC
>Mature Secondary Structure
MRYLLTHLDDLWALTVIHLRLSLIPIVLGLLIAVPLGALVQRTTALRRLTTITASIIFTI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PSLALFVVLPLIIPTRILDEANVIVALTLYTVALLVRAVPEALDAVSPAVLDAATAVGYK
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
PLTRMLKIELPLAVPVLIASLRVVAVTNISMVSVGSVIGVGGLGTWFTEGYQANKSDQIV
HHHHHHHHHCCHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHH
AGIIAIFVLAVVIDTLIMLIGKALTPWARATRPARQKAGAAA
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7592481; 10216873; 9384377 [H]