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The map label for this gene is pds [H]

Identifier: 108801908

GI number: 108801908

Start: 5235323

End: 5236681

Strand: Reverse

Name: pds [H]

Synonym: Mmcs_4945

Alternate gene names: 108801908

Gene position: 5236681-5235323 (Counterclockwise)

Preceding gene: 108801909

Following gene: 108801907

Centisome position: 91.78

GC content: 70.05

Gene sequence:

>1359_bases
ATGAGCACAGACACACGTCGCTTCGTCGTCATCGGCGGGGGGCTGGCGGGCCTCGCGTCGGCCGTCTGGCTGGCCGAGGC
CGGCCGCGACGTCGTCCTGCTCGAGCGGCGTGGCAGGCTCGGCGGCCGCACCCACGCCATGCGGGCCGACCAGGTCGACG
ACGTGCCCGACAACGGCCAGCACGTGATCGCCAGCGGCTACCACCACCTGTACCGCTACCTCGACAGCGTCGGCACCCGC
GAACACCTCGCCTTCCCCAAGGTCTCCACGCTGCGCTGGCCCGACGGCCGCAAGACGACGATGCAGACCACGGGACTCGG
TGCGCTGCGCACCCTGTTCGGTGTGCACCCCGACGCCGGTGTCGGTGACCGGCTCCGGGCCGCACGCGCCACGCTCAGAC
TGGGCTGGCAGGCGCTGCGCCAGCCAGCCGACCTGGCGGACCTGACCACCGAGCAGTGGTTCGAGCGGGTCGGTATGCCC
GCCCCGGCACGAGAAGCGTTGTGGGACTGGCTCGCCCTGGGCATCGCCGCGGAACCGGTGTCGAAGGAATCGGCGAAGGT
CTTCGCCAACGTGATGGCGACCGGCATCAGGCTCGGTCTGCGACACCGCATCCCGGTGACGATCGGTTATCCGACGGTCG
ATCTCGACACGCTCTACATCTCCGGTGCGGTCAAGGTGTTCGAGGAACACGGTGTCGACGTGCGGTACCGCGCCGTGGCG
CGCCGCATCCACATCGACGGCGGCGTCGTCACCGGGGTGTCGCTCGCCGACGGCACGCACATCCCCGCCGACGCGGTGGT
CTGCGCCGTGCCGAACTCGAACATCGAGGGTCTGCTCGACGATCTGCCCGAACACGCCGAGATCTACGCCGCCGCAGACA
AACTCGGCCACACCCCGATCGTCAGCACCAACCTCTACCTGGACCGGCCGCTGGGCACCGAGACGGCGTTCGAGGGGTTG
ATCGGCGGCACCGGCGTCATCGACGAGGTCTTCGACCGGCAGATCATGCACGGCCGCCGCACCGACCGCGCGTGGCTGTA
CTGCCTGACCACCAGCGGCGCCTACGAACAGATCACGAAGACCAGCGACGAGATCGTCGCCGAGCAGATGGCCCTGCTGA
GGCGTTACTACCCGGCCGCCCGGCACGCCAATGTCCTTCAGGCGCAGGTGGTCCGGATGCCGAAGGCCACCTTCTCCCAG
GTGGTCGGCACCGATGCGCTGCGGCCGCCGCAGCGGACCTCGGTGCCGTCACTGGTCCTCGCCGGTGACTGGACCGCGAC
CAACTGGTCGGCCACGATGGAGAGCGCCGTCGAGAGCGCCGCCACGGCGGTGCGGCTGCTGCTCGCCCAGCATCCGTGA

Upstream 100 bases:

>100_bases
TGCTGACCGCCTACGGCTCACCGTGGGGGGTCAAGGAGCTGACGCCGTAGCCGCGGATGGGCTAACTTACAACTCGTAAG
TTGACTCCGCGGAGGTCGGG

Downstream 100 bases:

>100_bases
CGCACACGCCCCGCCGCCGGATGTCGGGTGCCGACCGGCGCGCGCAACTCCTCGACATCGCCCGCGACATCGTCGCCGCG
GACGGATTCACCGCGCTGTC

Product: amine oxidase

Products: NA

Alternate protein names: Phytoene desaturase [H]

Number of amino acids: Translated: 452; Mature: 451

Protein sequence:

>452_residues
MSTDTRRFVVIGGGLAGLASAVWLAEAGRDVVLLERRGRLGGRTHAMRADQVDDVPDNGQHVIASGYHHLYRYLDSVGTR
EHLAFPKVSTLRWPDGRKTTMQTTGLGALRTLFGVHPDAGVGDRLRAARATLRLGWQALRQPADLADLTTEQWFERVGMP
APAREALWDWLALGIAAEPVSKESAKVFANVMATGIRLGLRHRIPVTIGYPTVDLDTLYISGAVKVFEEHGVDVRYRAVA
RRIHIDGGVVTGVSLADGTHIPADAVVCAVPNSNIEGLLDDLPEHAEIYAAADKLGHTPIVSTNLYLDRPLGTETAFEGL
IGGTGVIDEVFDRQIMHGRRTDRAWLYCLTTSGAYEQITKTSDEIVAEQMALLRRYYPAARHANVLQAQVVRMPKATFSQ
VVGTDALRPPQRTSVPSLVLAGDWTATNWSATMESAVESAATAVRLLLAQHP

Sequences:

>Translated_452_residues
MSTDTRRFVVIGGGLAGLASAVWLAEAGRDVVLLERRGRLGGRTHAMRADQVDDVPDNGQHVIASGYHHLYRYLDSVGTR
EHLAFPKVSTLRWPDGRKTTMQTTGLGALRTLFGVHPDAGVGDRLRAARATLRLGWQALRQPADLADLTTEQWFERVGMP
APAREALWDWLALGIAAEPVSKESAKVFANVMATGIRLGLRHRIPVTIGYPTVDLDTLYISGAVKVFEEHGVDVRYRAVA
RRIHIDGGVVTGVSLADGTHIPADAVVCAVPNSNIEGLLDDLPEHAEIYAAADKLGHTPIVSTNLYLDRPLGTETAFEGL
IGGTGVIDEVFDRQIMHGRRTDRAWLYCLTTSGAYEQITKTSDEIVAEQMALLRRYYPAARHANVLQAQVVRMPKATFSQ
VVGTDALRPPQRTSVPSLVLAGDWTATNWSATMESAVESAATAVRLLLAQHP
>Mature_451_residues
STDTRRFVVIGGGLAGLASAVWLAEAGRDVVLLERRGRLGGRTHAMRADQVDDVPDNGQHVIASGYHHLYRYLDSVGTRE
HLAFPKVSTLRWPDGRKTTMQTTGLGALRTLFGVHPDAGVGDRLRAARATLRLGWQALRQPADLADLTTEQWFERVGMPA
PAREALWDWLALGIAAEPVSKESAKVFANVMATGIRLGLRHRIPVTIGYPTVDLDTLYISGAVKVFEEHGVDVRYRAVAR
RIHIDGGVVTGVSLADGTHIPADAVVCAVPNSNIEGLLDDLPEHAEIYAAADKLGHTPIVSTNLYLDRPLGTETAFEGLI
GGTGVIDEVFDRQIMHGRRTDRAWLYCLTTSGAYEQITKTSDEIVAEQMALLRRYYPAARHANVLQAQVVRMPKATFSQV
VGTDALRPPQRTSVPSLVLAGDWTATNWSATMESAVESAATAVRLLLAQHP

Specific function: This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene [H]

COG id: COG3349

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carotenoid/retinoid oxidoreductase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001613
- InterPro:   IPR002937
- InterPro:   IPR014102 [H]

Pfam domain/function: PF01593 Amino_oxidase [H]

EC number: NA

Molecular weight: Translated: 49182; Mature: 49050

Theoretical pI: Translated: 7.09; Mature: 7.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTDTRRFVVIGGGLAGLASAVWLAEAGRDVVLLERRGRLGGRTHAMRADQVDDVPDNGQ
CCCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHCCCCCCCCCCCCCCC
HVIASGYHHLYRYLDSVGTREHLAFPKVSTLRWPDGRKTTMQTTGLGALRTLFGVHPDAG
EEEHHHHHHHHHHHHHCCCHHHHCCCCCCEEECCCCCCCEEECCCHHHHHHHHCCCCCCC
VGDRLRAARATLRLGWQALRQPADLADLTTEQWFERVGMPAPAREALWDWLALGIAAEPV
CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC
SKESAKVFANVMATGIRLGLRHRIPVTIGYPTVDLDTLYISGAVKVFEEHGVDVRYRAVA
CHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCEEEEEEEHHHHHHHHHCCCCEEEEHHH
RRIHIDGGVVTGVSLADGTHIPADAVVCAVPNSNIEGLLDDLPEHAEIYAAADKLGHTPI
HHEEECCCEEEEEEECCCCCCCCCCEEEECCCCCHHHHHHCCCHHHHHHHHHHHCCCCCE
VSTNLYLDRPLGTETAFEGLIGGTGVIDEVFDRQIMHGRRTDRAWLYCLTTSGAYEQITK
EECCEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHC
TSDEIVAEQMALLRRYYPAARHANVLQAQVVRMPKATFSQVVGTDALRPPQRTSVPSLVL
CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCEEE
AGDWTATNWSATMESAVESAATAVRLLLAQHP
ECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
STDTRRFVVIGGGLAGLASAVWLAEAGRDVVLLERRGRLGGRTHAMRADQVDDVPDNGQ
CCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHCCCCCCCCCCCCCCC
HVIASGYHHLYRYLDSVGTREHLAFPKVSTLRWPDGRKTTMQTTGLGALRTLFGVHPDAG
EEEHHHHHHHHHHHHHCCCHHHHCCCCCCEEECCCCCCCEEECCCHHHHHHHHCCCCCCC
VGDRLRAARATLRLGWQALRQPADLADLTTEQWFERVGMPAPAREALWDWLALGIAAEPV
CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC
SKESAKVFANVMATGIRLGLRHRIPVTIGYPTVDLDTLYISGAVKVFEEHGVDVRYRAVA
CHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCEEEEEEEHHHHHHHHHCCCCEEEEHHH
RRIHIDGGVVTGVSLADGTHIPADAVVCAVPNSNIEGLLDDLPEHAEIYAAADKLGHTPI
HHEEECCCEEEEEEECCCCCCCCCCEEEECCCCCHHHHHHCCCHHHHHHHHHHHCCCCCE
VSTNLYLDRPLGTETAFEGLIGGTGVIDEVFDRQIMHGRRTDRAWLYCLTTSGAYEQITK
EECCEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHC
TSDEIVAEQMALLRRYYPAARHANVLQAQVVRMPKATFSQVVGTDALRPPQRTSVPSLVL
CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCEEE
AGDWTATNWSATMESAVESAATAVRLLLAQHP
ECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1581575; 8905231 [H]