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The map label for this gene is cspA [H]

Identifier: 108801438

GI number: 108801438

Start: 4755035

End: 4755478

Strand: Reverse

Name: cspA [H]

Synonym: Mmcs_4475

Alternate gene names: 108801438

Gene position: 4755478-4755035 (Counterclockwise)

Preceding gene: 108801443

Following gene: 108801437

Centisome position: 83.35

GC content: 69.14

Gene sequence:

>444_bases
ATGTCAGTGCGAGACGACGAGCAGGTGACCAAAGTGCCGACCGGCAGGGTGAAGTGGTACGACGCCGAAAAGGGCTTCGG
CTTTCTGTCCCAGGAGGACGGCGAGGACGTGTACGTCCGGTCCTCGGCGCTGCCCGCGGGTGTCGAGGGACTCAAGGCGG
GCCAGCGCGTCGAGTTCGGCGTGGCGGCCGGACGGCGCGGGCCGCAGGCGCTGAGCCTCACCCTGATCGATCCGCCGCCG
AGCCTGAGCAAGACCCGTCGGGAGGCCGAACGCCCCGAGCACAAGCACACCCCCGACGAACTGCACGGCATGATCGGTGA
CCTCATCACCCTGCTCGAGAGTGCGATCCAGCCCGACCTGCAGAAGGGCCGCTACCCCGACCGCAAGGTCGCACGCCGGG
TGTCGGAGGTCGTCAAGGCCGTCGCCCGCGAACTCGACGCCTGA

Upstream 100 bases:

>100_bases
AGCGGTGGCACAAAGCCTACCGATAAGGGTGTGAAGTCGCCGGGCGAGTCCGAGTAGGATCGGCCTCGACGCGTCCCGGC
GCAAGCGGGACGCTTTCCTT

Downstream 100 bases:

>100_bases
TCCTTCACCGGCGCCCGCGCCGAACGTGAACTCCTGGCGAAAATCCGACGGATTCTTCGCAGTGGCTTCACGTTCGGCGA
AACCGGGCATGCTCGGGGCA

Product: cold-shock DNA-binding family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 147; Mature: 146

Protein sequence:

>147_residues
MSVRDDEQVTKVPTGRVKWYDAEKGFGFLSQEDGEDVYVRSSALPAGVEGLKAGQRVEFGVAAGRRGPQALSLTLIDPPP
SLSKTRREAERPEHKHTPDELHGMIGDLITLLESAIQPDLQKGRYPDRKVARRVSEVVKAVARELDA

Sequences:

>Translated_147_residues
MSVRDDEQVTKVPTGRVKWYDAEKGFGFLSQEDGEDVYVRSSALPAGVEGLKAGQRVEFGVAAGRRGPQALSLTLIDPPP
SLSKTRREAERPEHKHTPDELHGMIGDLITLLESAIQPDLQKGRYPDRKVARRVSEVVKAVARELDA
>Mature_146_residues
SVRDDEQVTKVPTGRVKWYDAEKGFGFLSQEDGEDVYVRSSALPAGVEGLKAGQRVEFGVAAGRRGPQALSLTLIDPPPS
LSKTRREAERPEHKHTPDELHGMIGDLITLLESAIQPDLQKGRYPDRKVARRVSEVVKAVARELDA

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 16201; Mature: 16070

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVRDDEQVTKVPTGRVKWYDAEKGFGFLSQEDGEDVYVRSSALPAGVEGLKAGQRVEFG
CCCCCCCHHHCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHCCCCEEEHH
VAAGRRGPQALSLTLIDPPPSLSKTRREAERPEHKHTPDELHGMIGDLITLLESAIQPDL
HHCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHH
QKGRYPDRKVARRVSEVVKAVARELDA
HHCCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SVRDDEQVTKVPTGRVKWYDAEKGFGFLSQEDGEDVYVRSSALPAGVEGLKAGQRVEFG
CCCCCCHHHCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHCCCCEEEHH
VAAGRRGPQALSLTLIDPPPSLSKTRREAERPEHKHTPDELHGMIGDLITLLESAIQPDL
HHCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHH
QKGRYPDRKVARRVSEVVKAVARELDA
HHCCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11296296 [H]