Click here to switch to the map view.

The map label for this gene is yjiR [C]

Identifier: 108801025

GI number: 108801025

Start: 4330284

End: 4330649

Strand: Reverse

Name: yjiR [C]

Synonym: Mmcs_4061

Alternate gene names: 108801025

Gene position: 4330649-4330284 (Counterclockwise)

Preceding gene: 108801027

Following gene: 108801022

Centisome position: 75.9

GC content: 71.58

Gene sequence:

>366_bases
GTGGCCGGTTTGGCGGAGTGGGTGTCGCTCGACGCGCGAGCGGCCCGGCCGTTGTTCGACCAGTTGCGCACCCAGATCAT
CGACGCCGTCCGCGACGGCAGACTCTCGCCGGGGACCCGGCTCCCGACGGTGCGTGAACTCGCCGGCCAGATGGGCCTCG
CGGTCAACACGGTGGCCCGGGCGTACCGCGAACTCGAGACGGCGGGGGTCCTCGAGACACGTGGACGGTTCGGCACCTTC
GTCTCGCGTGTCGACCCAGCCGACACGGCGATGGCGACCGCCGCGCAGAACTACGTCGAGACGGCGCGGGCGCTGGGCGT
CGAGAAGTCCGCGGCGCTGCGGTACGTGGAGTCCGCGTTCGACTGA

Upstream 100 bases:

>100_bases
CACGAAAGGTCGGCACCCCGCTCTCCGCGGAGATGCCGGCCCCGCTGAGCACCGTCACCTGCACATGACCAATTTAGCCG
GTGTGGGAGATACTGGGCAC

Downstream 100 bases:

>100_bases
GGCTCTCCGCCGTCGGTCAGCCGAATTCGAGCAGGGTCCAGACCGGGCGCACGGCATCGAACACCGGAATCCGCTGAACC
GTCCACAGCAGCGCATTGAG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Regulatory Protein GntR HTH; GntR-Family Transcriptional Regulator; Transcriptional Regulator; Transcriptional Regulator-Like Protein; Regulator; Gntr Family Transcriptional Regulator; Transcriptional Regulatory Protein; Regulatory Protein GntR; Transcriptional Regulatory Protein PtsJ; Transcriptional Regulator YtrA

Number of amino acids: Translated: 121; Mature: 120

Protein sequence:

>121_residues
MAGLAEWVSLDARAARPLFDQLRTQIIDAVRDGRLSPGTRLPTVRELAGQMGLAVNTVARAYRELETAGVLETRGRFGTF
VSRVDPADTAMATAAQNYVETARALGVEKSAALRYVESAFD

Sequences:

>Translated_121_residues
MAGLAEWVSLDARAARPLFDQLRTQIIDAVRDGRLSPGTRLPTVRELAGQMGLAVNTVARAYRELETAGVLETRGRFGTF
VSRVDPADTAMATAAQNYVETARALGVEKSAALRYVESAFD
>Mature_120_residues
AGLAEWVSLDARAARPLFDQLRTQIIDAVRDGRLSPGTRLPTVRELAGQMGLAVNTVARAYRELETAGVLETRGRFGTFV
SRVDPADTAMATAAQNYVETARALGVEKSAALRYVESAFD

Specific function: Unknown

COG id: COG1725

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13086; Mature: 12955

Theoretical pI: Translated: 6.84; Mature: 6.84

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGLAEWVSLDARAARPLFDQLRTQIIDAVRDGRLSPGTRLPTVRELAGQMGLAVNTVAR
CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCHHHHHHHH
AYRELETAGVLETRGRFGTFVSRVDPADTAMATAAQNYVETARALGVEKSAALRYVESAF
HHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
D
C
>Mature Secondary Structure 
AGLAEWVSLDARAARPLFDQLRTQIIDAVRDGRLSPGTRLPTVRELAGQMGLAVNTVAR
CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCHHHHHHHH
AYRELETAGVLETRGRFGTFVSRVDPADTAMATAAQNYVETARALGVEKSAALRYVESAF
HHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
D
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA