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The map label for this gene is atpD [H]

Identifier: 108800840

GI number: 108800840

Start: 4128539

End: 4130068

Strand: Reverse

Name: atpD [H]

Synonym: Mmcs_3876

Alternate gene names: 108800840

Gene position: 4130068-4128539 (Counterclockwise)

Preceding gene: 108800841

Following gene: 108800839

Centisome position: 72.39

GC content: 66.93

Gene sequence:

>1530_bases
ATGACTGCTGCCACCGAACAAAAAGAGAAGACCGGCACCGACAACGTCGGCCGCGTCGTGCGGGTCACCGGGCCTGTCGT
CGACGTCGAGTTCCCGCGCGGGTCCGTGCCGGAGCTGTTCAACGCACTGCACGCGGAGATCTCCTACAAGGACCTCGCCA
AGACGCTGACCCTCGAGGTCGCCCAGCACCTCGGCGACAGCCTGGTGCGCTGCATCTCGATGCAGCCGACCGACGGCCTG
GTTCGCGGCGTCGACGTCACCGACACCGGCGCCTCGATCTCGGTGCCCGTCGGCGAGGGCGTCAAGGGCCACGTGTTCAA
CGCCCTGGGTGCCTGCCTCGACGACCCCGGCTACGGCAAGGACTTCGAGAAGTGGTCCATCCACCGCAAGCCGCCGGCCT
TCGACGAGCTCGAGCCGCGTACCGAGATGCTCGAGACCGGCCTCAAGGTCGTCGACCTGCTCACCCCCTACGTCCGCGGC
GGCAAGATCGCCCTGTTCGGTGGCGCCGGTGTGGGCAAGACCGTGCTCATCCAGGAGATGATCAACCGCATCGCCCGCAA
CTTCGGCGGCACCTCGGTGTTCGCCGGTGTGGGTGAGCGCACCCGTGAGGGCAACGACCTGTGGGTCGAGCTCGCCGACG
CGAACGTGCTCAAGGACACCGCCCTGGTGTTCGGCCAGATGGACGAGCCGCCCGGCACGCGTATGCGCGTCGCCCTGTCG
GCGCTGACCATGGCGGAGTACTTCCGCGACGAGAAGCAGCAGGACGTGCTGCTGTTCATCGACAACATCTTCCGGTTCAC
CCAGGCCGGTTCGGAGGTCTCCACGCTGCTCGGCCGTATGCCGTCGGCGGTGGGCTACCAGCCGACCCTGGCCGACGAGA
TGGGTGAGCTCCAGGAACGCATCACCTCGACGCGTGGTCGCTCCATCACCTCGATGCAGGCCGTGTACGTGCCCGCCGAC
GACTACACCGACCCGGCCCCGGCCACCACGTTCGCGCACCTCGACGCGACGACGGAGCTGAGCCGTTCGGTGTTCTCCAA
GGGCATCTTCCCGGCGGTGGACCCGCTGGCCTCCAGCTCGACCATCCTCGACCCGTCGGTCGTCGGTGACGAGCACTACC
GTGTCGCCCAGGAAGTCATCCGGATCCTGCAGCGCTACAAGGACCTTCAGGACATCATCGCCATCCTCGGTATCGACGAA
CTCGCCGAGGAGGACAAGCAGCTCGTCCAGCGCGCGCGTCGTATCGAGCGCTTCCTGAGCCAGAACATGATGGCGGCCGA
GCAGTTCACCGGTCAGCCCGGCTCGACGGTGCCGCTCAAGGAGACCATCGAGGCGTTCGACAAGCTCAGCAAGGGCGATT
TCGACCACCTGCCCGAGCAGGCGTTCTTCCTCATCGGTGGCCTCGAGGATCTGCAGCGCAAGGCCGAGAGCCTCGGCGCC
AAGATGGAGGACACCTCCGGCGACGGCGCCCCGGCCCAGAGCGATTCCAAGAGCGACTCCAAGGGTGACGACGCAGACAA
GGACGCCTGA

Upstream 100 bases:

>100_bases
GAAATCAGCGAGATCGTCGGTGGCGCGAACGCGCTCGCGGACGCCGCCAAGAAGTAACCGGCCTGAAGCCCAGCGATAGA
GCCAGGAAGCGAATAAGAGA

Downstream 100 bases:

>100_bases
CGATGGCCGACCTTGACGTAGACATCGTCGCCGTCGAGCGGGAGATCTGGTCGGGTAAGGCGACATTCGTCTTCACCCGC
ACCACCTCCGGTGAGATCGG

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta [H]

Number of amino acids: Translated: 509; Mature: 508

Protein sequence:

>509_residues
MTAATEQKEKTGTDNVGRVVRVTGPVVDVEFPRGSVPELFNALHAEISYKDLAKTLTLEVAQHLGDSLVRCISMQPTDGL
VRGVDVTDTGASISVPVGEGVKGHVFNALGACLDDPGYGKDFEKWSIHRKPPAFDELEPRTEMLETGLKVVDLLTPYVRG
GKIALFGGAGVGKTVLIQEMINRIARNFGGTSVFAGVGERTREGNDLWVELADANVLKDTALVFGQMDEPPGTRMRVALS
ALTMAEYFRDEKQQDVLLFIDNIFRFTQAGSEVSTLLGRMPSAVGYQPTLADEMGELQERITSTRGRSITSMQAVYVPAD
DYTDPAPATTFAHLDATTELSRSVFSKGIFPAVDPLASSSTILDPSVVGDEHYRVAQEVIRILQRYKDLQDIIAILGIDE
LAEEDKQLVQRARRIERFLSQNMMAAEQFTGQPGSTVPLKETIEAFDKLSKGDFDHLPEQAFFLIGGLEDLQRKAESLGA
KMEDTSGDGAPAQSDSKSDSKGDDADKDA

Sequences:

>Translated_509_residues
MTAATEQKEKTGTDNVGRVVRVTGPVVDVEFPRGSVPELFNALHAEISYKDLAKTLTLEVAQHLGDSLVRCISMQPTDGL
VRGVDVTDTGASISVPVGEGVKGHVFNALGACLDDPGYGKDFEKWSIHRKPPAFDELEPRTEMLETGLKVVDLLTPYVRG
GKIALFGGAGVGKTVLIQEMINRIARNFGGTSVFAGVGERTREGNDLWVELADANVLKDTALVFGQMDEPPGTRMRVALS
ALTMAEYFRDEKQQDVLLFIDNIFRFTQAGSEVSTLLGRMPSAVGYQPTLADEMGELQERITSTRGRSITSMQAVYVPAD
DYTDPAPATTFAHLDATTELSRSVFSKGIFPAVDPLASSSTILDPSVVGDEHYRVAQEVIRILQRYKDLQDIIAILGIDE
LAEEDKQLVQRARRIERFLSQNMMAAEQFTGQPGSTVPLKETIEAFDKLSKGDFDHLPEQAFFLIGGLEDLQRKAESLGA
KMEDTSGDGAPAQSDSKSDSKGDDADKDA
>Mature_508_residues
TAATEQKEKTGTDNVGRVVRVTGPVVDVEFPRGSVPELFNALHAEISYKDLAKTLTLEVAQHLGDSLVRCISMQPTDGLV
RGVDVTDTGASISVPVGEGVKGHVFNALGACLDDPGYGKDFEKWSIHRKPPAFDELEPRTEMLETGLKVVDLLTPYVRGG
KIALFGGAGVGKTVLIQEMINRIARNFGGTSVFAGVGERTREGNDLWVELADANVLKDTALVFGQMDEPPGTRMRVALSA
LTMAEYFRDEKQQDVLLFIDNIFRFTQAGSEVSTLLGRMPSAVGYQPTLADEMGELQERITSTRGRSITSMQAVYVPADD
YTDPAPATTFAHLDATTELSRSVFSKGIFPAVDPLASSSTILDPSVVGDEHYRVAQEVIRILQRYKDLQDIIAILGIDEL
AEEDKQLVQRARRIERFLSQNMMAAEQFTGQPGSTVPLKETIEAFDKLSKGDFDHLPEQAFFLIGGLEDLQRKAESLGAK
MEDTSGDGAPAQSDSKSDSKGDDADKDA

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=482, Percent_Identity=60.7883817427386, Blast_Score=562, Evalue=1e-160,
Organism=Homo sapiens, GI19913424, Length=323, Percent_Identity=28.1733746130031, Blast_Score=110, Evalue=4e-24,
Organism=Homo sapiens, GI19913426, Length=361, Percent_Identity=23.5457063711911, Blast_Score=93, Evalue=6e-19,
Organism=Homo sapiens, GI50345984, Length=428, Percent_Identity=25.4672897196262, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI4757810, Length=428, Percent_Identity=25.4672897196262, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI19913428, Length=363, Percent_Identity=23.9669421487603, Blast_Score=91, Evalue=3e-18,
Organism=Escherichia coli, GI1790170, Length=462, Percent_Identity=59.5238095238095, Blast_Score=555, Evalue=1e-159,
Organism=Escherichia coli, GI1788251, Length=305, Percent_Identity=30.8196721311475, Blast_Score=111, Evalue=9e-26,
Organism=Escherichia coli, GI1790172, Length=320, Percent_Identity=27.1875, Blast_Score=99, Evalue=9e-22,
Organism=Caenorhabditis elegans, GI25144756, Length=478, Percent_Identity=58.9958158995816, Blast_Score=548, Evalue=1e-156,
Organism=Caenorhabditis elegans, GI17565854, Length=323, Percent_Identity=28.7925696594427, Blast_Score=114, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI17570191, Length=352, Percent_Identity=22.7272727272727, Blast_Score=96, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI17510931, Length=354, Percent_Identity=22.8813559322034, Blast_Score=96, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI71988080, Length=357, Percent_Identity=26.3305322128852, Blast_Score=90, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI71988063, Length=357, Percent_Identity=26.3305322128852, Blast_Score=90, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI71988074, Length=364, Percent_Identity=24.4505494505494, Blast_Score=72, Evalue=7e-13,
Organism=Saccharomyces cerevisiae, GI6322581, Length=460, Percent_Identity=61.304347826087, Blast_Score=554, Evalue=1e-158,
Organism=Saccharomyces cerevisiae, GI6319603, Length=437, Percent_Identity=25.1716247139588, Blast_Score=99, Evalue=1e-21,
Organism=Saccharomyces cerevisiae, GI6319370, Length=361, Percent_Identity=26.5927977839335, Blast_Score=87, Evalue=4e-18,
Organism=Saccharomyces cerevisiae, GI6320016, Length=310, Percent_Identity=25.4838709677419, Blast_Score=71, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24638766, Length=468, Percent_Identity=59.8290598290598, Blast_Score=550, Evalue=1e-157,
Organism=Drosophila melanogaster, GI28574560, Length=482, Percent_Identity=58.50622406639, Blast_Score=540, Evalue=1e-154,
Organism=Drosophila melanogaster, GI20129479, Length=324, Percent_Identity=29.320987654321, Blast_Score=112, Evalue=5e-25,
Organism=Drosophila melanogaster, GI24583992, Length=355, Percent_Identity=26.7605633802817, Blast_Score=111, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24583988, Length=349, Percent_Identity=27.5071633237822, Blast_Score=108, Evalue=7e-24,
Organism=Drosophila melanogaster, GI24583986, Length=349, Percent_Identity=27.5071633237822, Blast_Score=108, Evalue=7e-24,
Organism=Drosophila melanogaster, GI24583984, Length=349, Percent_Identity=27.5071633237822, Blast_Score=108, Evalue=7e-24,
Organism=Drosophila melanogaster, GI281361666, Length=360, Percent_Identity=25.2777777777778, Blast_Score=98, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24646341, Length=360, Percent_Identity=25.2777777777778, Blast_Score=98, Evalue=1e-20,
Organism=Drosophila melanogaster, GI17136796, Length=360, Percent_Identity=25.2777777777778, Blast_Score=98, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24658560, Length=357, Percent_Identity=25.7703081232493, Blast_Score=87, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24638768, Length=94, Percent_Identity=45.7446808510638, Blast_Score=77, Evalue=4e-14,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 55354; Mature: 55223

Theoretical pI: Translated: 4.48; Mature: 4.48

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAATEQKEKTGTDNVGRVVRVTGPVVDVEFPRGSVPELFNALHAEISYKDLAKTLTLEV
CCCCCCCHHHCCCCCCCCEEEEECCEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHH
AQHLGDSLVRCISMQPTDGLVRGVDVTDTGASISVPVGEGVKGHVFNALGACLDDPGYGK
HHHHHHHHHHHHCCCCCCCCEECCCEECCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCC
DFEKWSIHRKPPAFDELEPRTEMLETGLKVVDLLTPYVRGGKIALFGGAGVGKTVLIQEM
CHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHH
INRIARNFGGTSVFAGVGERTREGNDLWVELADANVLKDTALVFGQMDEPPGTRMRVALS
HHHHHHHCCCCHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHH
ALTMAEYFRDEKQQDVLLFIDNIFRFTQAGSEVSTLLGRMPSAVGYQPTLADEMGELQER
HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCHHCCCCCHHHHHHHHHHHH
ITSTRGRSITSMQAVYVPADDYTDPAPATTFAHLDATTELSRSVFSKGIFPAVDPLASSS
HHHHCCCCEEEEEEEEECCCCCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCC
TILDPSVVGDEHYRVAQEVIRILQRYKDLQDIIAILGIDELAEEDKQLVQRARRIERFLS
CCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
QNMMAAEQFTGQPGSTVPLKETIEAFDKLSKGDFDHLPEQAFFLIGGLEDLQRKAESLGA
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHCCHHHHHHHCCHHHHHHHHHHHCC
KMEDTSGDGAPAQSDSKSDSKGDDADKDA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TAATEQKEKTGTDNVGRVVRVTGPVVDVEFPRGSVPELFNALHAEISYKDLAKTLTLEV
CCCCCCHHHCCCCCCCCEEEEECCEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHH
AQHLGDSLVRCISMQPTDGLVRGVDVTDTGASISVPVGEGVKGHVFNALGACLDDPGYGK
HHHHHHHHHHHHCCCCCCCCEECCCEECCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCC
DFEKWSIHRKPPAFDELEPRTEMLETGLKVVDLLTPYVRGGKIALFGGAGVGKTVLIQEM
CHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHH
INRIARNFGGTSVFAGVGERTREGNDLWVELADANVLKDTALVFGQMDEPPGTRMRVALS
HHHHHHHCCCCHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHH
ALTMAEYFRDEKQQDVLLFIDNIFRFTQAGSEVSTLLGRMPSAVGYQPTLADEMGELQER
HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCHHCCCCCHHHHHHHHHHHH
ITSTRGRSITSMQAVYVPADDYTDPAPATTFAHLDATTELSRSVFSKGIFPAVDPLASSS
HHHHCCCCEEEEEEEEECCCCCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCC
TILDPSVVGDEHYRVAQEVIRILQRYKDLQDIIAILGIDELAEEDKQLVQRARRIERFLS
CCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
QNMMAAEQFTGQPGSTVPLKETIEAFDKLSKGDFDHLPEQAFFLIGGLEDLQRKAESLGA
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHCCHHHHHHHCCHHHHHHHHHHHCC
KMEDTSGDGAPAQSDSKSDSKGDDADKDA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA