Click here to switch to the map view.

The map label for this gene is rnz [C]

Identifier: 108800809

GI number: 108800809

Start: 4090704

End: 4091477

Strand: Reverse

Name: rnz [C]

Synonym: Mmcs_3845

Alternate gene names: 108800809

Gene position: 4091477-4090704 (Counterclockwise)

Preceding gene: 108800810

Following gene: 108800808

Centisome position: 71.71

GC content: 69.64

Gene sequence:

>774_bases
GTGGGCGTGCGAATCACCGTACTCGGTTGCTCCGGCAGTGTCGTCGGGCCTGATTCGCCGGCGTCCGGATACCTGGTGAC
CGCGCCCGACACCCCGCCGCTGGTGCTCGATTTCGGTGGCGGCGTGCTGGGCGCGCTGCAGCGCCACGCCGACCCCAACT
CGGTGTACGTGCTGCTGAGCCATCTGCACGCCGACCACTGTCTGGACCTGCCCGGGTTGTTCGTGTGGCGCAGGTACCAC
CCGTCGCCGGCTCCGGATCGCGGGGTGCTCTACGGTCCGGCCAACACGTGGGCCCGGTTGGGCGCCGCATCCTCACCGGA
GGGCGGCGAGATCGACGACATCTCCGACATCTTCGAGGTGCGGAACTGGTCGGACAACTCCGCCGTGCAGATCGGGGCGC
TGTCGGTGCTGCCGCGACTGGTCTGCCACCCCACCGAGTCCTACGGGATGCGCCTGACCGACCCGTCCGGCGCGACGTTC
GTCTACAGCGGTGACACCGGGTTCTGCGATCCGCTCATCGAACTCGCCCGCGGGGCCGATGTGTTCCTCTGCGAGGCGTC
GTGGACGCATTCGCCGGAGCATCCGCCCGGACTGCATCTGTCGGGTACGGAGGCCGGCCGGGCGGCGGCGCTCGCCGGGG
TCGGCGAACTGCTGCTGACCCACATCCCGCCGTGGACCTCACGCGAGGACGTGATCAGCGAGGCCAAGGCGGAGTTCGAC
GGTCCCGTGCACGCCGTGGTGTGCAACGAGTCGTTCGACGTCACGCATCGCTGA

Upstream 100 bases:

>100_bases
GTGCAACGCCGCATCGAGGCTTGAGGATCGCCGCACCCGTGGCCGGGGACGGGAAACCCGGCGATGTTTTCGTCAACGGG
GTAATGGGCATGGCAAGCTA

Downstream 100 bases:

>100_bases
CGGGGCCACCGGTTAGGGTTGGCCCGTGTCCAGACGAGAAGACGGTCGGCTTGACGACGAGTTGCGTCCGGTGCGCATCA
CCCGCGGTTTCACCTCGCAT

Product: beta-lactamase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 256

Protein sequence:

>257_residues
MGVRITVLGCSGSVVGPDSPASGYLVTAPDTPPLVLDFGGGVLGALQRHADPNSVYVLLSHLHADHCLDLPGLFVWRRYH
PSPAPDRGVLYGPANTWARLGAASSPEGGEIDDISDIFEVRNWSDNSAVQIGALSVLPRLVCHPTESYGMRLTDPSGATF
VYSGDTGFCDPLIELARGADVFLCEASWTHSPEHPPGLHLSGTEAGRAAALAGVGELLLTHIPPWTSREDVISEAKAEFD
GPVHAVVCNESFDVTHR

Sequences:

>Translated_257_residues
MGVRITVLGCSGSVVGPDSPASGYLVTAPDTPPLVLDFGGGVLGALQRHADPNSVYVLLSHLHADHCLDLPGLFVWRRYH
PSPAPDRGVLYGPANTWARLGAASSPEGGEIDDISDIFEVRNWSDNSAVQIGALSVLPRLVCHPTESYGMRLTDPSGATF
VYSGDTGFCDPLIELARGADVFLCEASWTHSPEHPPGLHLSGTEAGRAAALAGVGELLLTHIPPWTSREDVISEAKAEFD
GPVHAVVCNESFDVTHR
>Mature_256_residues
GVRITVLGCSGSVVGPDSPASGYLVTAPDTPPLVLDFGGGVLGALQRHADPNSVYVLLSHLHADHCLDLPGLFVWRRYHP
SPAPDRGVLYGPANTWARLGAASSPEGGEIDDISDIFEVRNWSDNSAVQIGALSVLPRLVCHPTESYGMRLTDPSGATFV
YSGDTGFCDPLIELARGADVFLCEASWTHSPEHPPGLHLSGTEAGRAAALAGVGELLLTHIPPWTSREDVISEAKAEFDG
PVHAVVCNESFDVTHR

Specific function: Zinc Phosphodiesterase, Which Displays Some Trna 3'- Processing Endonuclease Activity. Probably Involved In Trna Maturation, By Removing A 3'Trailer From Precursor Trna. [C]

COG id: COG1234

COG function: function code R; Metal-dependent hydrolases of the beta-lactamase superfamily III

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the atsA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279 [H]

Pfam domain/function: PF00753 Lactamase_B [H]

EC number: 3.1.26.11 [C]

Molecular weight: Translated: 27222; Mature: 27090

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVRITVLGCSGSVVGPDSPASGYLVTAPDTPPLVLDFGGGVLGALQRHADPNSVYVLLS
CCEEEEEEECCCCEECCCCCCCCEEEECCCCCCEEEECCCHHHHHHHHCCCCCCEEEEEE
HLHADHCLDLPGLFVWRRYHPSPAPDRGVLYGPANTWARLGAASSPEGGEIDDISDIFEV
HHCHHHHCCCCCCEEEEEECCCCCCCCCEEECCCHHHHHHCCCCCCCCCCCCHHHHHHHH
RNWSDNSAVQIGALSVLPRLVCHPTESYGMRLTDPSGATFVYSGDTGFCDPLIELARGAD
CCCCCCCEEEEHHHHHHHHHHHCCCHHHCEEEECCCCCEEEEECCCCCHHHHHHHHCCCC
VFLCEASWTHSPEHPPGLHLSGTEAGRAAALAGVGELLLTHIPPWTSREDVISEAKAEFD
EEEEECCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC
GPVHAVVCNESFDVTHR
CCEEEEEECCCCCCCCC
>Mature Secondary Structure 
GVRITVLGCSGSVVGPDSPASGYLVTAPDTPPLVLDFGGGVLGALQRHADPNSVYVLLS
CEEEEEEECCCCEECCCCCCCCEEEECCCCCCEEEECCCHHHHHHHHCCCCCCEEEEEE
HLHADHCLDLPGLFVWRRYHPSPAPDRGVLYGPANTWARLGAASSPEGGEIDDISDIFEV
HHCHHHHCCCCCCEEEEEECCCCCCCCCEEECCCHHHHHHCCCCCCCCCCCCHHHHHHHH
RNWSDNSAVQIGALSVLPRLVCHPTESYGMRLTDPSGATFVYSGDTGFCDPLIELARGAD
CCCCCCCEEEEHHHHHHHHHHHCCCHHHCEEEECCCCCEEEEECCCCCHHHHHHHHCCCC
VFLCEASWTHSPEHPPGLHLSGTEAGRAAALAGVGELLLTHIPPWTSREDVISEAKAEFD
EEEEECCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC
GPVHAVVCNESFDVTHR
CCEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]