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The map label for this gene is yagA [C]

Identifier: 108800685

GI number: 108800685

Start: 3972729

End: 3973730

Strand: Reverse

Name: yagA [C]

Synonym: Mmcs_3720

Alternate gene names: 108800685

Gene position: 3973730-3972729 (Counterclockwise)

Preceding gene: 108800686

Following gene: 108800682

Centisome position: 69.65

GC content: 65.07

Gene sequence:

>1002_bases
GTGGCTTGTCTAGGTCCATACCGTCCGGAGGTTCTCGTGTCCCACCGTAATGCTCGTACGACGTTTCATGGTCGGCTGTT
GATGGTGCGCCGCCATCAGGCCGGTTGGCCCAAGGCTCATATCGCCAGTGCGATGGGGGTGTCACGCAAGTGCGTGCACA
CCTGGATCAGCCGGTTCGAGGCCGACGGCGAGGCCGGGCGGATCGACCGCTCCTCGCGGCCCCACACCTCGCCAATGCGC
ACCGCGCAGCGGCTGGAGAACCAAATCGTGGCCTGGCGGCGCCGTCACCGTTGCGGCCCGGAGGAAATCGGCGCGAAGTT
GGGGGTGTCGGCTCGGACAGTGTCCCGGGTATTGCACCGCCGTGGTGCGCCCTACCTGCGGGATTGCGATCCGATGACCG
GACAGGTCATCCGCGCCTCAAAGTCCACGGCGGTGCGTTATGAGCGCGGCCGACCCGGCGAACTGGTCCACATGGACGTT
AAGAAATTGGGCCGTATCCCTGACGGCGGTGGCTGGCGAGCCCACGGTCGAGGCTGTGCACCTGACCGCAAGCGGTTGCG
CGGCAATGGATTCGACTACATCCACTCACTTGTCGACGATCACAGCCGGCTGGCGTACTCCGAAATCCTGCCCGACGAGA
AAGGCTCCACCTGCGCCGGGTTCCTCGAACGCGCAGCCCACTACTTCCGCGCCCACGGCATCACCACCATCGAGCAGGTC
ATGACCGACAACGCCTGGGCCTACCGGTATTCCCTGCGCGATGTCTGCACCCAGCTCGGTGCCCGCCAAATCTTCATCAG
GCCCCACTGCCCCTGGCAGAACGGCAAGGTAGAGCGGCTCAACCGAACCCTGCAGACCGAATGGGCCTACAAGCGGGTCT
TCACCTCCAATGCCCACCGCGCCGCCGCGCTTGCGCCCTGGCTCAAGCACTACAACACTCAACGCCGTCACAGTGCACTC
GGCGGCCTCCCACCGATCAGCCGACTGACACCAACCTCATGA

Upstream 100 bases:

>100_bases
CGGGGATGGGACAGCATGCCTGCCCGCATCTAGGTGTACCGAGACAGGACGTTGGTAGCGGGCGTGTTGGCTTGATGTGA
GGAGAACCTCCGGGTGGGGT

Downstream 100 bases:

>100_bases
CTCGGTACATCTAGGCGGCCGCGGTGGCCGCCCGCCGCGTCAGGTAGTCGATCTGCAGGTATATCGCGTAGAGCACCAGC
GGTGGCAGCACGATGAACGG

Product: integrase catalytic subunit

Products: NA

Alternate protein names: Integrase Catalytic Region; Integrase Catalytic Subunit; Integrase Family Protein; Integrase Catalytic Domain-Containing Protein; Transposase For ISMyma; Integrase; ISBm3 Transposase Programmed; Histidine Kinase; ISAca1 Transposase; Transposase ; ISmav2-Like Transposase; Transposase For Tn; Insertion Element ISCmi2 Transposase; Insertion Sequence Transposase Protein; Noncomposite Transposon Transposase; Transposase Undefined; Insertion Element; Transposase Of; Transposase Integrase; LOW QUALITY PROTEIN Transposase ; ISBm3 Transposase Programmed Frameshift

Number of amino acids: Translated: 333; Mature: 332

Protein sequence:

>333_residues
MACLGPYRPEVLVSHRNARTTFHGRLLMVRRHQAGWPKAHIASAMGVSRKCVHTWISRFEADGEAGRIDRSSRPHTSPMR
TAQRLENQIVAWRRRHRCGPEEIGAKLGVSARTVSRVLHRRGAPYLRDCDPMTGQVIRASKSTAVRYERGRPGELVHMDV
KKLGRIPDGGGWRAHGRGCAPDRKRLRGNGFDYIHSLVDDHSRLAYSEILPDEKGSTCAGFLERAAHYFRAHGITTIEQV
MTDNAWAYRYSLRDVCTQLGARQIFIRPHCPWQNGKVERLNRTLQTEWAYKRVFTSNAHRAAALAPWLKHYNTQRRHSAL
GGLPPISRLTPTS

Sequences:

>Translated_333_residues
MACLGPYRPEVLVSHRNARTTFHGRLLMVRRHQAGWPKAHIASAMGVSRKCVHTWISRFEADGEAGRIDRSSRPHTSPMR
TAQRLENQIVAWRRRHRCGPEEIGAKLGVSARTVSRVLHRRGAPYLRDCDPMTGQVIRASKSTAVRYERGRPGELVHMDV
KKLGRIPDGGGWRAHGRGCAPDRKRLRGNGFDYIHSLVDDHSRLAYSEILPDEKGSTCAGFLERAAHYFRAHGITTIEQV
MTDNAWAYRYSLRDVCTQLGARQIFIRPHCPWQNGKVERLNRTLQTEWAYKRVFTSNAHRAAALAPWLKHYNTQRRHSAL
GGLPPISRLTPTS
>Mature_332_residues
ACLGPYRPEVLVSHRNARTTFHGRLLMVRRHQAGWPKAHIASAMGVSRKCVHTWISRFEADGEAGRIDRSSRPHTSPMRT
AQRLENQIVAWRRRHRCGPEEIGAKLGVSARTVSRVLHRRGAPYLRDCDPMTGQVIRASKSTAVRYERGRPGELVHMDVK
KLGRIPDGGGWRAHGRGCAPDRKRLRGNGFDYIHSLVDDHSRLAYSEILPDEKGSTCAGFLERAAHYFRAHGITTIEQVM
TDNAWAYRYSLRDVCTQLGARQIFIRPHCPWQNGKVERLNRTLQTEWAYKRVFTSNAHRAAALAPWLKHYNTQRRHSALG
GLPPISRLTPTS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786462, Length=302, Percent_Identity=26.8211920529801, Blast_Score=69, Evalue=6e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37842; Mature: 37711

Theoretical pI: Translated: 11.34; Mature: 11.34

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MACLGPYRPEVLVSHRNARTTFHGRLLMVRRHQAGWPKAHIASAMGVSRKCVHTWISRFE
CCCCCCCCCCEEEECCCCCEEECCEEEEEEECCCCCCHHHHHHHHCHHHHHHHHHHHHHC
ADGEAGRIDRSSRPHTSPMRTAQRLENQIVAWRRRHRCGPEEIGAKLGVSARTVSRVLHR
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHH
RGAPYLRDCDPMTGQVIRASKSTAVRYERGRPGELVHMDVKKLGRIPDGGGWRAHGRGCA
CCCCCCCCCCCCCCHHHHCCCHHHEEECCCCCCCEEEECHHHHCCCCCCCCCCCCCCCCC
PDRKRLRGNGFDYIHSLVDDHSRLAYSEILPDEKGSTCAGFLERAAHYFRAHGITTIEQV
CHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHH
MTDNAWAYRYSLRDVCTQLGARQIFIRPHCPWQNGKVERLNRTLQTEWAYKRVFTSNAHR
HCCCCCEEHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHH
AAALAPWLKHYNTQRRHSALGGLPPISRLTPTS
HHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
ACLGPYRPEVLVSHRNARTTFHGRLLMVRRHQAGWPKAHIASAMGVSRKCVHTWISRFE
CCCCCCCCCEEEECCCCCEEECCEEEEEEECCCCCCHHHHHHHHCHHHHHHHHHHHHHC
ADGEAGRIDRSSRPHTSPMRTAQRLENQIVAWRRRHRCGPEEIGAKLGVSARTVSRVLHR
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHH
RGAPYLRDCDPMTGQVIRASKSTAVRYERGRPGELVHMDVKKLGRIPDGGGWRAHGRGCA
CCCCCCCCCCCCCCHHHHCCCHHHEEECCCCCCCEEEECHHHHCCCCCCCCCCCCCCCCC
PDRKRLRGNGFDYIHSLVDDHSRLAYSEILPDEKGSTCAGFLERAAHYFRAHGITTIEQV
CHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHH
MTDNAWAYRYSLRDVCTQLGARQIFIRPHCPWQNGKVERLNRTLQTEWAYKRVFTSNAHR
HCCCCCEEHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHH
AAALAPWLKHYNTQRRHSALGGLPPISRLTPTS
HHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA