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The map label for this gene is pdtaR [H]

Identifier: 108799987

GI number: 108799987

Start: 3192562

End: 3193194

Strand: Reverse

Name: pdtaR [H]

Synonym: Mmcs_3021

Alternate gene names: 108799987

Gene position: 3193194-3192562 (Counterclockwise)

Preceding gene: 108799988

Following gene: 108799986

Centisome position: 55.97

GC content: 67.93

Gene sequence:

>633_bases
ATGACATCCATGACCGGCTCACCGACCGACGCGCCGACGCCCCGCCGCGTGCTCATCGCCGAAGACGAGGCGCTCATCCG
GATGGACCTGGCCGAGATGCTGCGCGACGAGGGCTACGAGATCGTCGGCGAGGCCGGCGACGGGCAGGAAGCCGTCGAAC
TCGCCGAGCAACTGCGGCCGGACCTCGTCATCATGGACGTCAAGATGCCGCGTCGCGACGGGATCGATGCCGCCTCGGAG
ATCGCGAGCAAGCGGATCGCCCCGATCGTCATCCTCACTGCCTTCAGCCAGCGCGATCTCGTCGAGCGGGCACGCGACGC
CGGGGCGATGGCGTATCTGGTCAAACCGTTCAACGTCAACGATCTGATCCCCGCCATCGAGGTGGCGGTCAGCCGCTTCA
GCGAGATCCACGCACTCGAGCAGGAGGTCGCGACGCTCTCGGACCGGCTGGAGACGCGCAAGCTCGTCGAGCGGGCGAAG
GGGCTGCTGCAGGCCAACCAGGGCATGACGGAGCCGGAAGCCTTCAAGTGGATCCAGCGCGCCGCGATGGACCGCAGGAC
CACCATGAAGCGGGTGGCCGAGGTGGTGCTCGAGACGCTGGACACCCCGAAAAGCGAGCCGTCCGCCGGGTAG

Upstream 100 bases:

>100_bases
TTTTGAATCCGTTTCCTCTGCCAGTTGGGATACGAGGGCCTGCGGTGTTCCACCATAGAGGATGGCCCCGAGGTCGCTGA
TCGCCCGGGTTACCGCCACA

Downstream 100 bases:

>100_bases
GGCGCGCCACGCCTTTTCCAACAACACGCGATATGGCCAGGTGTTGGCTATGTTCTACCGGAAGCGTCAGCGCCCTGCGG
CCGATCCGGTCGCGGGAGTC

Product: response regulator receiver/ANTAR domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 209

Protein sequence:

>210_residues
MTSMTGSPTDAPTPRRVLIAEDEALIRMDLAEMLRDEGYEIVGEAGDGQEAVELAEQLRPDLVIMDVKMPRRDGIDAASE
IASKRIAPIVILTAFSQRDLVERARDAGAMAYLVKPFNVNDLIPAIEVAVSRFSEIHALEQEVATLSDRLETRKLVERAK
GLLQANQGMTEPEAFKWIQRAAMDRRTTMKRVAEVVLETLDTPKSEPSAG

Sequences:

>Translated_210_residues
MTSMTGSPTDAPTPRRVLIAEDEALIRMDLAEMLRDEGYEIVGEAGDGQEAVELAEQLRPDLVIMDVKMPRRDGIDAASE
IASKRIAPIVILTAFSQRDLVERARDAGAMAYLVKPFNVNDLIPAIEVAVSRFSEIHALEQEVATLSDRLETRKLVERAK
GLLQANQGMTEPEAFKWIQRAAMDRRTTMKRVAEVVLETLDTPKSEPSAG
>Mature_209_residues
TSMTGSPTDAPTPRRVLIAEDEALIRMDLAEMLRDEGYEIVGEAGDGQEAVELAEQLRPDLVIMDVKMPRRDGIDAASEI
ASKRIAPIVILTAFSQRDLVERARDAGAMAYLVKPFNVNDLIPAIEVAVSRFSEIHALEQEVATLSDRLETRKLVERAKG
LLQANQGMTEPEAFKWIQRAAMDRRTTMKRVAEVVLETLDTPKSEPSAG

Specific function: Member of the two-component regulatory system pdtaR/pdtaS [H]

COG id: COG3707

COG function: function code T; Response regulator with putative antiterminator output domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788550, Length=138, Percent_Identity=31.1594202898551, Blast_Score=77, Evalue=6e-16,
Organism=Escherichia coli, GI1786911, Length=118, Percent_Identity=36.4406779661017, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI87082052, Length=104, Percent_Identity=34.6153846153846, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1788521, Length=116, Percent_Identity=36.2068965517241, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1790299, Length=120, Percent_Identity=30, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1790437, Length=123, Percent_Identity=33.3333333333333, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1786599, Length=123, Percent_Identity=33.3333333333333, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1787375, Length=121, Percent_Identity=34.7107438016529, Blast_Score=61, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005561
- InterPro:   IPR011006
- InterPro:   IPR008327
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03861 ANTAR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 23217; Mature: 23086

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: PS50921 ANTAR ; PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSMTGSPTDAPTPRRVLIAEDEALIRMDLAEMLRDEGYEIVGEAGDGQEAVELAEQLRP
CCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHCC
DLVIMDVKMPRRDGIDAASEIASKRIAPIVILTAFSQRDLVERARDAGAMAYLVKPFNVN
CEEEEECCCCCCCCCCHHHHHHHHCCCHHHEEECCCHHHHHHHHHHCCCEEEEECCCCCH
DLIPAIEVAVSRFSEIHALEQEVATLSDRLETRKLVERAKGLLQANQGMTEPEAFKWIQR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
AAMDRRTTMKRVAEVVLETLDTPKSEPSAG
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TSMTGSPTDAPTPRRVLIAEDEALIRMDLAEMLRDEGYEIVGEAGDGQEAVELAEQLRP
CCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHCC
DLVIMDVKMPRRDGIDAASEIASKRIAPIVILTAFSQRDLVERARDAGAMAYLVKPFNVN
CEEEEECCCCCCCCCCHHHHHHHHCCCHHHEEECCCHHHHHHHHHHCCCEEEEECCCCCH
DLIPAIEVAVSRFSEIHALEQEVATLSDRLETRKLVERAKGLLQANQGMTEPEAFKWIQR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
AAMDRRTTMKRVAEVVLETLDTPKSEPSAG
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]