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The map label for this gene is scpB [H]

Identifier: 108799896

GI number: 108799896

Start: 3086761

End: 3087456

Strand: Reverse

Name: scpB [H]

Synonym: Mmcs_2930

Alternate gene names: 108799896

Gene position: 3087456-3086761 (Counterclockwise)

Preceding gene: 108799897

Following gene: 108799895

Centisome position: 54.11

GC content: 70.11

Gene sequence:

>696_bases
ATGACCGACGAGATCACCGATGGCAACCTCGGCATCGACGTCGCGACCGCCCCCGAGCTCGACGACTCCGAACTGCGCAA
CGTACTCGAAGCCCTGCTCCTGGTCGTGGACACACCCGCGACCGTGGACCAGCTGGCCGAGGTGACCGACCAGCCTGGCT
ACCGAATCGCCACCATGCTCACCGAGATGGCCGCCGACCTGGCCGCCCGCGACAGCGGCATCGACCTGCGCGAGGCAGGC
GGTGGCTGGCGGATGTACACCCGGTCGCGCTACGCCCCGTACGTCGAGCGGCTGCTGCTCGACGGCGCCCGCTCCAAACT
CACCCGTGCGGCGCTGGAGACGCTGGCCGTGGTCGCCTACCGCCAGCCGGTGACCCGCGCGCGGGTCAGCGCGGTCCGCG
GGGTCAACGTCGACGCCGTCATGCGCACGCTGCTGGCCCGCGGGCTGATCACCGAGGCGGGCACAGACCCGGACTCGGGG
GCGGTCACGTTCGCCACCACCGGGTTGTTCCTCGAGCGGCTCGGGCTGTCCTCGCTGGCCGACCTGCCCGACATCGCCCC
GCTGCTGCCCGACGTCGACGTGATCGACGATCTGAGCGAATCGCTCGCGGACGAACCGAGATTCATGAAACTGGGCGGCG
TGCCCGCACCCACCGGACAGCCGATGTCCTACGACGTGGACAAGGATGACCGATGA

Upstream 100 bases:

>100_bases
ACCAGGCAGAACCGCTTGGTGTGCTCCAGGTTTCGTGGACCGGGGATAGGCCGACCAACGAACAACTGGCAACCGTCGAC
GCGGGAGAACAACGAGAGCA

Downstream 100 bases:

>100_bases
CCGAACCCGATGGTGTCCGACTGCAGAAAGTGTTGTCGCAGGCCGGAATCGCGTCCCGCCGAGTCGCCGAGAAGATGATC
CTCGACGGCCGCGTCGAAGT

Product: condensin subunit ScpB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 230

Protein sequence:

>231_residues
MTDEITDGNLGIDVATAPELDDSELRNVLEALLLVVDTPATVDQLAEVTDQPGYRIATMLTEMAADLAARDSGIDLREAG
GGWRMYTRSRYAPYVERLLLDGARSKLTRAALETLAVVAYRQPVTRARVSAVRGVNVDAVMRTLLARGLITEAGTDPDSG
AVTFATTGLFLERLGLSSLADLPDIAPLLPDVDVIDDLSESLADEPRFMKLGGVPAPTGQPMSYDVDKDDR

Sequences:

>Translated_231_residues
MTDEITDGNLGIDVATAPELDDSELRNVLEALLLVVDTPATVDQLAEVTDQPGYRIATMLTEMAADLAARDSGIDLREAG
GGWRMYTRSRYAPYVERLLLDGARSKLTRAALETLAVVAYRQPVTRARVSAVRGVNVDAVMRTLLARGLITEAGTDPDSG
AVTFATTGLFLERLGLSSLADLPDIAPLLPDVDVIDDLSESLADEPRFMKLGGVPAPTGQPMSYDVDKDDR
>Mature_230_residues
TDEITDGNLGIDVATAPELDDSELRNVLEALLLVVDTPATVDQLAEVTDQPGYRIATMLTEMAADLAARDSGIDLREAGG
GWRMYTRSRYAPYVERLLLDGARSKLTRAALETLAVVAYRQPVTRARVSAVRGVNVDAVMRTLLARGLITEAGTDPDSGA
VTFATTGLFLERLGLSSLADLPDIAPLLPDVDVIDDLSESLADEPRFMKLGGVPAPTGQPMSYDVDKDDR

Specific function: Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing smc and scpA that pull DNA away from mid-cell into both cell halves [H]

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm. Note=Associated with two foci at the outer edges of the nucleoid region in young cells, and at four foci within both cell halves in older cells (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005234
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04079 DUF387 [H]

EC number: NA

Molecular weight: Translated: 24805; Mature: 24674

Theoretical pI: Translated: 4.09; Mature: 4.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDEITDGNLGIDVATAPELDDSELRNVLEALLLVVDTPATVDQLAEVTDQPGYRIATML
CCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHH
TEMAADLAARDSGIDLREAGGGWRMYTRSRYAPYVERLLLDGARSKLTRAALETLAVVAY
HHHHHHHHHCCCCCCHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RQPVTRARVSAVRGVNVDAVMRTLLARGLITEAGTDPDSGAVTFATTGLFLERLGLSSLA
HCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHCHHHHH
DLPDIAPLLPDVDVIDDLSESLADEPRFMKLGGVPAPTGQPMSYDVDKDDR
CCCCHHHHCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEECCCCCCC
>Mature Secondary Structure 
TDEITDGNLGIDVATAPELDDSELRNVLEALLLVVDTPATVDQLAEVTDQPGYRIATML
CCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHH
TEMAADLAARDSGIDLREAGGGWRMYTRSRYAPYVERLLLDGARSKLTRAALETLAVVAY
HHHHHHHHHCCCCCCHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RQPVTRARVSAVRGVNVDAVMRTLLARGLITEAGTDPDSGAVTFATTGLFLERLGLSSLA
HCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHCHHHHH
DLPDIAPLLPDVDVIDDLSESLADEPRFMKLGGVPAPTGQPMSYDVDKDDR
CCCCHHHHCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA