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The map label for this gene is 108798194

Identifier: 108798194

GI number: 108798194

Start: 1322613

End: 1323536

Strand: Direct

Name: 108798194

Synonym: Mmcs_1223

Alternate gene names: NA

Gene position: 1322613-1323536 (Clockwise)

Preceding gene: 108798191

Following gene: 108798196

Centisome position: 23.18

GC content: 71.97

Gene sequence:

>924_bases
ATGACCGCGAGTGCGCGGATCGACGAGTTCGAGAGCCTGCGACCGTATCTGCTGTCGGTGGGCTACCGCCTGACGGGTTC
GGTGGCCGATGCCGAAGACGCCGTGCAGGATGCCTGGCTGCGGTGGGATGCGCTGGGGGAGGACTGGTCCGGCATCGCCG
ATCTGCGCGCGTGGCTGACGACGGTGGTCAGCCGCATCGGCCTCGACCGGTTGCGGTCGGCCGCCCGGCGGCGGGAGACC
TACGTCGGCGAATGGCTGCCCGAACCCGTCGTCACGGGATTGGACCGCACCGATCCGTTGTCGGCGGTGGTCGCCGCCGA
GGACGCCCGGTTCGCGGCGATGGTGGTGCTCGACCGGTTGACGCCCGACCAGCGGGTGGCGTTCGTCCTGCACGACGGCT
TCGCGGTGTCGTTCACCGAGATCGCCGGCGTCCTCGGGGTGAACCCCGCCGCGGCCCGTCAACTCGCGTCGCGGGCCCGC
CGGGCCGTCGCCGATGCCGAGGCACCCGCCCGCGACCCGTCCCACGACGAGGTCGTGGGCCGGCTGATGGCGGCGATGGC
AGCGGGTGACATGGCCGCCGTCGTTGAACTGCTGCACCCCGACGTCACCTTCACCGGAGACTCGAACCGTAAGGCGCCCA
CCGCTCCTCGCGTCATCCACGGCGCCGACAAGGTGGCCAGGTTCGTCTTCGGGCTGGCCCGTCGCTACGGGCCGCGGTTC
TTCGAGGCGGGCGAGCTCGCACTCGTCAACGGCGACCTCGGCCTCTGCACCGCGGGCCTGCCCGCCGACGGTGAGTGGCC
CGCGATGGCGCCGCGCATCCAGGCGCTGACCGTGCGCGACGGCAAGGTGTGCGCGATCTGGGACGTCGCCAACCCGGACA
AGTTCACGGCTTCGCCCATGGCACCCGGCAGGCGTCGGTACTGA

Upstream 100 bases:

>100_bases
ACGCTACTGGATCCACTGTTTCGTTTCCTGGACAACCGCTGTGCGGGAGCTGAGCAGACAGCCAGAATTCGCCGGCGGCT
GCGCTCCTACACTCGGCCCT

Downstream 100 bases:

>100_bases
ACCCCTGCTCGGTGATGCCCAGCGCCGCATACATCCGGGCTCGCATGTTCTCCACCCCGATCTGGTAGGTCAGCTCGATC
ACCCCGGCCTCCCCGAACCG

Product: RNA polymerase sigma factor SigJ

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma Factor SigJ; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase ECF-Subfamily Sigma Factor; Sigma Factor; RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; ECF Subfamily RNA Polymerase Sigma Factor; Sigma-; RNA Polymerase Sigma-70 Factor; ECF-Sigma Factor; Sigma Factor Sigma; ECF Family RNA Polymerase Sigma Factor; Sigma-70 Region 2 Domain-Containing Protein; RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase; Sigma-70 Family RNA Polymerase; RNA Polymerase Sigma Factor Sigma-70 Family Protein; Sigma-70 Factor; AlteRNAtive RNA Polymerase Sigma Factor; AlteRNAtive RNA Polymerase Sigma Factor SigJ; RNA Polymerase Sigma-24 Factor Protein; RNA Polymerase Sigma Subunit ECF Family; RNA Polymerase Sigma-24 Subunit; AlteRNAtive RNA Polymerase Sigma Factor SigJ-Like Protein; RNA Polymerase Sigma-70 Factor Family; ECF-Type Sigma Factor; RNA Polymerase Sigma-70 ECF Type; RNA Polymerase Sigma-70 Factor Protein; DNA-Directed RNA Polymeracialized Sigma Subunit; ECF-Family Protein RNA Polymerase Sigma Factor; RNA Polymerase ECF-Type Sigma Factor SigJ

Number of amino acids: Translated: 307; Mature: 306

Protein sequence:

>307_residues
MTASARIDEFESLRPYLLSVGYRLTGSVADAEDAVQDAWLRWDALGEDWSGIADLRAWLTTVVSRIGLDRLRSAARRRET
YVGEWLPEPVVTGLDRTDPLSAVVAAEDARFAAMVVLDRLTPDQRVAFVLHDGFAVSFTEIAGVLGVNPAAARQLASRAR
RAVADAEAPARDPSHDEVVGRLMAAMAAGDMAAVVELLHPDVTFTGDSNRKAPTAPRVIHGADKVARFVFGLARRYGPRF
FEAGELALVNGDLGLCTAGLPADGEWPAMAPRIQALTVRDGKVCAIWDVANPDKFTASPMAPGRRRY

Sequences:

>Translated_307_residues
MTASARIDEFESLRPYLLSVGYRLTGSVADAEDAVQDAWLRWDALGEDWSGIADLRAWLTTVVSRIGLDRLRSAARRRET
YVGEWLPEPVVTGLDRTDPLSAVVAAEDARFAAMVVLDRLTPDQRVAFVLHDGFAVSFTEIAGVLGVNPAAARQLASRAR
RAVADAEAPARDPSHDEVVGRLMAAMAAGDMAAVVELLHPDVTFTGDSNRKAPTAPRVIHGADKVARFVFGLARRYGPRF
FEAGELALVNGDLGLCTAGLPADGEWPAMAPRIQALTVRDGKVCAIWDVANPDKFTASPMAPGRRRY
>Mature_306_residues
TASARIDEFESLRPYLLSVGYRLTGSVADAEDAVQDAWLRWDALGEDWSGIADLRAWLTTVVSRIGLDRLRSAARRRETY
VGEWLPEPVVTGLDRTDPLSAVVAAEDARFAAMVVLDRLTPDQRVAFVLHDGFAVSFTEIAGVLGVNPAAARQLASRARR
AVADAEAPARDPSHDEVVGRLMAAMAAGDMAAVVELLHPDVTFTGDSNRKAPTAPRVIHGADKVARFVFGLARRYGPRFF
EAGELALVNGDLGLCTAGLPADGEWPAMAPRIQALTVRDGKVCAIWDVANPDKFTASPMAPGRRRY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33178; Mature: 33047

Theoretical pI: Translated: 5.46; Mature: 5.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTASARIDEFESLRPYLLSVGYRLTGSVADAEDAVQDAWLRWDALGEDWSGIADLRAWLT
CCCCCCCHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
TVVSRIGLDRLRSAARRRETYVGEWLPEPVVTGLDRTDPLSAVVAAEDARFAAMVVLDRL
HHHHHHCHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHCCCHHHHHHHHHHC
TPDQRVAFVLHDGFAVSFTEIAGVLGVNPAAARQLASRARRAVADAEAPARDPSHDEVVG
CCCCEEEEEEECCCEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
RLMAAMAAGDMAAVVELLHPDVTFTGDSNRKAPTAPRVIHGADKVARFVFGLARRYGPRF
HHHHHHHCCHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCE
FEAGELALVNGDLGLCTAGLPADGEWPAMAPRIQALTVRDGKVCAIWDVANPDKFTASPM
ECCCCEEEEECCCCEEECCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCC
APGRRRY
CCCCCCC
>Mature Secondary Structure 
TASARIDEFESLRPYLLSVGYRLTGSVADAEDAVQDAWLRWDALGEDWSGIADLRAWLT
CCCCCCHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
TVVSRIGLDRLRSAARRRETYVGEWLPEPVVTGLDRTDPLSAVVAAEDARFAAMVVLDRL
HHHHHHCHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHCCCHHHHHHHHHHC
TPDQRVAFVLHDGFAVSFTEIAGVLGVNPAAARQLASRARRAVADAEAPARDPSHDEVVG
CCCCEEEEEEECCCEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
RLMAAMAAGDMAAVVELLHPDVTFTGDSNRKAPTAPRVIHGADKVARFVFGLARRYGPRF
HHHHHHHCCHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCE
FEAGELALVNGDLGLCTAGLPADGEWPAMAPRIQALTVRDGKVCAIWDVANPDKFTASPM
ECCCCEEEEECCCCEEECCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCC
APGRRRY
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA