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The map label for this gene is sigD [H]

Identifier: 108798135

GI number: 108798135

Start: 1259999

End: 1260577

Strand: Direct

Name: sigD [H]

Synonym: Mmcs_1164

Alternate gene names: 108798135

Gene position: 1259999-1260577 (Clockwise)

Preceding gene: 108798134

Following gene: 108798136

Centisome position: 22.08

GC content: 66.49

Gene sequence:

>579_bases
ATGACACTTTCGGGAGATCGTCTCGATGCTGTCGTCGCTGAGGCAGTGGCGGGCAATCGAGATGCACTCCGGGAAGTGCT
GGAGACCATTCGACCGATCGTCGTGCGGTACTGCCGAGCCAGGATCGGCGCGACGGAACGAAGTGGTCTGTCCGCAGACG
ACGTTGCGCAGGAGGTGTGCTTGGCCGCCATCACGGCGCTGCCGCGCTACAAGGATCAGGGACGACCGTTCCTCGCCTTC
GTGTATGGCATCGCAGCGCACAAGATCGCGGACGCCCACCGATCGGCGAGCCGAAACAAATCCGACCCCACCGACGTGGT
GCCGGAACGGTTCTCCGGCGAGGCGGGCCCCGAACAGCTGGCCATCAACGCCGAATCGTCGGCCCGGATGGAGAAGCTGC
TCGGTGTGCTGCCGGACAAGCAGCGCGAGATCCTCATCCTGCGCGTCGTCGTCGGCATGAGCGCCGAAGAAACCGCCGAG
GCCGTCGGGAGCACCGCCGGAGCGGTCCGCGTGGCCCAGCACCGCGCGCTGGCGCGACTCAAGGCCGAGATCATCGCAAC
GGGGCACGACCATGCCTGA

Upstream 100 bases:

>100_bases
GTCTGATCGCTAGTCCGGGTGGCGCCCGTAGGCATCGTTATTGTTTAGCTGAGCCAGACCGTCGGATACGCCGTTCGTAA
CGTTGGAGAACACACCCACG

Downstream 100 bases:

>100_bases
CTTCACACGCCGAGCATTCGACGGGGGCGATCCGTCGCTGCCCGAGATCAACCAGACCGACCGCCTACTCGACGCGCTCG
CCGGCGAACAGCCGGTGTAC

Product: RNA polymerase sigma factor SigD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 191

Protein sequence:

>192_residues
MTLSGDRLDAVVAEAVAGNRDALREVLETIRPIVVRYCRARIGATERSGLSADDVAQEVCLAAITALPRYKDQGRPFLAF
VYGIAAHKIADAHRSASRNKSDPTDVVPERFSGEAGPEQLAINAESSARMEKLLGVLPDKQREILILRVVVGMSAEETAE
AVGSTAGAVRVAQHRALARLKAEIIATGHDHA

Sequences:

>Translated_192_residues
MTLSGDRLDAVVAEAVAGNRDALREVLETIRPIVVRYCRARIGATERSGLSADDVAQEVCLAAITALPRYKDQGRPFLAF
VYGIAAHKIADAHRSASRNKSDPTDVVPERFSGEAGPEQLAINAESSARMEKLLGVLPDKQREILILRVVVGMSAEETAE
AVGSTAGAVRVAQHRALARLKAEIIATGHDHA
>Mature_191_residues
TLSGDRLDAVVAEAVAGNRDALREVLETIRPIVVRYCRARIGATERSGLSADDVAQEVCLAAITALPRYKDQGRPFLAFV
YGIAAHKIADAHRSASRNKSDPTDVVPERFSGEAGPEQLAINAESSARMEKLLGVLPDKQREILILRVVVGMSAEETAEA
VGSTAGAVRVAQHRALARLKAEIIATGHDHA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 20531; Mature: 20399

Theoretical pI: Translated: 7.06; Mature: 7.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLSGDRLDAVVAEAVAGNRDALREVLETIRPIVVRYCRARIGATERSGLSADDVAQEVC
CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
LAAITALPRYKDQGRPFLAFVYGIAAHKIADAHRSASRNKSDPTDVVPERFSGEAGPEQL
HHHHHHHHCHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCHHHCCCCCCHHE
AINAESSARMEKLLGVLPDKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL
EECCHHHHHHHHHHHCCCCCCHHEEHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHHH
KAEIIATGHDHA
HHHHHHCCCCCC
>Mature Secondary Structure 
TLSGDRLDAVVAEAVAGNRDALREVLETIRPIVVRYCRARIGATERSGLSADDVAQEVC
CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
LAAITALPRYKDQGRPFLAFVYGIAAHKIADAHRSASRNKSDPTDVVPERFSGEAGPEQL
HHHHHHHHCHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCHHHCCCCCCHHE
AINAESSARMEKLLGVLPDKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL
EECCHHHHHHHHHHHCCCCCCHHEEHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHHH
KAEIIATGHDHA
HHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]