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The map label for this gene is eccD4 [H]

Identifier: 108798097

GI number: 108798097

Start: 1223306

End: 1224637

Strand: Reverse

Name: eccD4 [H]

Synonym: Mmcs_1125

Alternate gene names: 108798097

Gene position: 1224637-1223306 (Counterclockwise)

Preceding gene: 108798109

Following gene: 108798096

Centisome position: 21.46

GC content: 72.75

Gene sequence:

>1332_bases
GTGGCGACATCTCAAGCGATGGGAGTAGCCGTGTCGGCCAACCTGTGTCACGTCTCTGTCCATGCCGACGACGTCGGCGC
GGTGGATCTCGCGCTGCCCGCGCGGCTGCCGGTGGCGTCGCTGATCCCGGACATCGTCCGATTGGCCGGTGCCGACACCG
GGACGCCGGCACGGTGGGAGCTCGCCACGCTGTGCGGCACCGTCCTCGACGAGGCGGTTCCGTTGCAGGATCAGGACGTT
CGCGACGGTGACGTGTTGCTGCTCAGCCCCGCGCTGTCCCGTGTGCCGCGGTTCGACCGACCCGATGTCGTCACCGCGGT
GCTGGCGTCGGCGCCGCCGCAGGGTGACACGCGTGCGCTGCGGGTGATCGTGGGGGTGATCGCGGCGGCGGCGGGAGCGC
TCGCCGGTCTGGCCGGGCAGAGATCCGCGTCGCTGATCACCCTCGGCATGCTGGCGTGCCTGGTCGGCGGGACCGCGGTC
GCCATGTCGCGGGCGGGACGGGGGATGTGGGTGTGCGGTCCCCTCGGGTGGCTCACCGTACTGTTGGCCGGGCTGTGCGG
GGCGCTGGCCGTTCCGGGCGCGCTGGATGTGCCTCACGCACTGCTGGGTGTCGCTGCCGCAGCGTCTGTTTCGCTGGTCC
TCCTCCGCCTCCGGGTCGGGTCGCCGGTCGTGTCGACCGCGGCGGCGTGTGCGGGCCTGCTGTGCGCCGCGGTGATGTCG
GGCGCGGTGGTGTGGCAGGTGTCGCCGCATTCGGCCGGCGTCGCGCTGGCACTGCTGGCGCTCGGTGCGTTGAGCCTGGC
CCCACGTCTCTCTGTCCTGCTCTCCGGGCTGGCTCCTGCACCCTCGCTGACGGACGAACTCCTTCCCGACGCGGCCCACC
GGGCGGCCGCCGGGCACCGGCTTCTCGTCGGGCTGGTGATCGGCATCTGTGCGGCGGCGTGCATCGGCACCGCCGTGGTG
GCGATCGGGGGTCTCAGTGGTGCGCGACACTGGCTGTCCGGCACCGCGTTCTGCGTCGTCGCCGGAGCGGCGATGCTGCT
GCGGTCACGCTGCTACGCTGCGGGCGCGTGCCGGTGGGCGCTGACGCTGTCCGGATCGTGTTCGCTCACAGCAGCATTCG
TGGTGGCGGCGATGCGGTACGGTCCTTGGGCGGCGGCGGTGGCGGTCTGCGCCGGCGTCACCGTGATCGTGCGCGAGAGC
CCGGGTAAGCCGTCGCCGCTCGCCGCGCGCTCCGTCGAGGTGCTCGAGTACGCCGTCCTGGCGGCGGTGGTGCCGGTCGC
CTGCGCGGCACTCGACCTGTTCGCCATGGTCCGCACCTCGGACCTGATATGA

Upstream 100 bases:

>100_bases
GGAGATGTCCATCAGTGGTTGGACGGTGCCCGGCGCCGATCGGTTCCCTGTCCACAAGAACCGAATTCGGTGCGCGGGAC
TGTCGTGGCGCGCGGTTACG

Downstream 100 bases:

>100_bases
CCGGCCGACTCACCGCGGCGACCCTCACCGGACTGCTCGTGGCGGCGGTTCCGTTGGCGACGGCCCCGGAGGTGTCGGCG
GTGACCCCACCCGCCGTCGA

Product: hypothetical protein

Products: NA

Alternate protein names: ESX conserved component D4; Type VII secretion system protein eccD4; T7SS protein eccD4 [H]

Number of amino acids: Translated: 443; Mature: 442

Protein sequence:

>443_residues
MATSQAMGVAVSANLCHVSVHADDVGAVDLALPARLPVASLIPDIVRLAGADTGTPARWELATLCGTVLDEAVPLQDQDV
RDGDVLLLSPALSRVPRFDRPDVVTAVLASAPPQGDTRALRVIVGVIAAAAGALAGLAGQRSASLITLGMLACLVGGTAV
AMSRAGRGMWVCGPLGWLTVLLAGLCGALAVPGALDVPHALLGVAAAASVSLVLLRLRVGSPVVSTAAACAGLLCAAVMS
GAVVWQVSPHSAGVALALLALGALSLAPRLSVLLSGLAPAPSLTDELLPDAAHRAAAGHRLLVGLVIGICAAACIGTAVV
AIGGLSGARHWLSGTAFCVVAGAAMLLRSRCYAAGACRWALTLSGSCSLTAAFVVAAMRYGPWAAAVAVCAGVTVIVRES
PGKPSPLAARSVEVLEYAVLAAVVPVACAALDLFAMVRTSDLI

Sequences:

>Translated_443_residues
MATSQAMGVAVSANLCHVSVHADDVGAVDLALPARLPVASLIPDIVRLAGADTGTPARWELATLCGTVLDEAVPLQDQDV
RDGDVLLLSPALSRVPRFDRPDVVTAVLASAPPQGDTRALRVIVGVIAAAAGALAGLAGQRSASLITLGMLACLVGGTAV
AMSRAGRGMWVCGPLGWLTVLLAGLCGALAVPGALDVPHALLGVAAAASVSLVLLRLRVGSPVVSTAAACAGLLCAAVMS
GAVVWQVSPHSAGVALALLALGALSLAPRLSVLLSGLAPAPSLTDELLPDAAHRAAAGHRLLVGLVIGICAAACIGTAVV
AIGGLSGARHWLSGTAFCVVAGAAMLLRSRCYAAGACRWALTLSGSCSLTAAFVVAAMRYGPWAAAVAVCAGVTVIVRES
PGKPSPLAARSVEVLEYAVLAAVVPVACAALDLFAMVRTSDLI
>Mature_442_residues
ATSQAMGVAVSANLCHVSVHADDVGAVDLALPARLPVASLIPDIVRLAGADTGTPARWELATLCGTVLDEAVPLQDQDVR
DGDVLLLSPALSRVPRFDRPDVVTAVLASAPPQGDTRALRVIVGVIAAAAGALAGLAGQRSASLITLGMLACLVGGTAVA
MSRAGRGMWVCGPLGWLTVLLAGLCGALAVPGALDVPHALLGVAAAASVSLVLLRLRVGSPVVSTAAACAGLLCAAVMSG
AVVWQVSPHSAGVALALLALGALSLAPRLSVLLSGLAPAPSLTDELLPDAAHRAAAGHRLLVGLVIGICAAACIGTAVVA
IGGLSGARHWLSGTAFCVVAGAAMLLRSRCYAAGACRWALTLSGSCSLTAAFVVAAMRYGPWAAAVAVCAGVTVIVRESP
GKPSPLAARSVEVLEYAVLAAVVPVACAALDLFAMVRTSDLI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the eccD/snm4 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006707 [H]

Pfam domain/function: PF04600 DUF571 [H]

EC number: NA

Molecular weight: Translated: 43999; Mature: 43868

Theoretical pI: Translated: 7.75; Mature: 7.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATSQAMGVAVSANLCHVSVHADDVGAVDLALPARLPVASLIPDIVRLAGADTGTPARWE
CCCCCCCCEEEECCEEEEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHH
LATLCGTVLDEAVPLQDQDVRDGDVLLLSPALSRVPRFDRPDVVTAVLASAPPQGDTRAL
HHHHHHHHHHHCCCCCCCCCCCCCEEEECHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHH
RVIVGVIAAAAGALAGLAGQRSASLITLGMLACLVGGTAVAMSRAGRGMWVCGPLGWLTV
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHCCCCEEEECHHHHHHH
LLAGLCGALAVPGALDVPHALLGVAAAASVSLVLLRLRVGSPVVSTAAACAGLLCAAVMS
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
GAVVWQVSPHSAGVALALLALGALSLAPRLSVLLSGLAPAPSLTDELLPDAAHRAAAGHR
CCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCHHHHHHHCCHH
LLVGLVIGICAAACIGTAVVAIGGLSGARHWLSGTAFCVVAGAAMLLRSRCYAAGACRWA
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCEEEE
LTLSGSCSLTAAFVVAAMRYGPWAAAVAVCAGVTVIVRESPGKPSPLAARSVEVLEYAVL
EEECCCCHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHH
AAVVPVACAALDLFAMVRTSDLI
HHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ATSQAMGVAVSANLCHVSVHADDVGAVDLALPARLPVASLIPDIVRLAGADTGTPARWE
CCCCCCCEEEECCEEEEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHH
LATLCGTVLDEAVPLQDQDVRDGDVLLLSPALSRVPRFDRPDVVTAVLASAPPQGDTRAL
HHHHHHHHHHHCCCCCCCCCCCCCEEEECHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHH
RVIVGVIAAAAGALAGLAGQRSASLITLGMLACLVGGTAVAMSRAGRGMWVCGPLGWLTV
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHCCCCEEEECHHHHHHH
LLAGLCGALAVPGALDVPHALLGVAAAASVSLVLLRLRVGSPVVSTAAACAGLLCAAVMS
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
GAVVWQVSPHSAGVALALLALGALSLAPRLSVLLSGLAPAPSLTDELLPDAAHRAAAGHR
CCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCHHHHHHHCCHH
LLVGLVIGICAAACIGTAVVAIGGLSGARHWLSGTAFCVVAGAAMLLRSRCYAAGACRWA
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCEEEE
LTLSGSCSLTAAFVVAAMRYGPWAAAVAVCAGVTVIVRESPGKPSPLAARSVEVLEYAVL
EEECCCCHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHH
AAVVPVACAALDLFAMVRTSDLI
HHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]