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The map label for this gene is ycdT [C]

Identifier: 108798094

GI number: 108798094

Start: 1219401

End: 1220516

Strand: Reverse

Name: ycdT [C]

Synonym: Mmcs_1122

Alternate gene names: 108798094

Gene position: 1220516-1219401 (Counterclockwise)

Preceding gene: 108798096

Following gene: 108798093

Centisome position: 21.39

GC content: 69.35

Gene sequence:

>1116_bases
ATGCGGCAGTACTGGCGCCAGCCGGAACATTTCTATTGGCTGACCTCCTTCCTGGCCGCGCGGGAGGCGCAGTCGGCGAC
GTGCCGGCTGATCGCGATGTTCGTCGCGACGCTCGGGGCGGTGCCGCTGGCGATGCAGTGGAGCGACGCCGGCCCGAACA
CCACCTTCGAGCGCGGTGTCGGCGCCGCGGTCACGCTCAGCTGCCTGGTGATCGCGGGGTTCTGGTTGCGGCGCCGGTGG
CCGTCGCGGCGGCAATCCGGCGTGTTCGTGGCGGTGACGGCCGTCATCATCGCCGCCGGCTCCCTGATCATGTCCGACCC
CGAGGCCGGTCTGCTGCTGGCGACGGGCTTCGCGGTGTTGGGGGCCTACATCGCGCTGTTCCACACCGCCCACTACATCG
TCGGTGTGTTCGCGCTCTCCGAGTTCACCGGCGTCGTGCTGGCGTTCCGGCTGGCCGAGACGGCGGGTGCGGTGTGGGCG
CTGACGGCGCTCACCATCGTCATGACGGTCACCGTGGCGGTGCCGTTCGCCTGCCACCTGCTGCTCTACGCCGTCGACAT
CGACGTGGACAACGCCGACATCGACCCGCTGACCGGGTTGTTGAACCGTGAGGCGTTCTACCGCGCCGCCGGCCACGTGG
TCTCCCGCAGCCGTGACGACGATCAGCGCCTGGTGTTGGTGGTCATCAACCTCGACAACATGCGACTGCTGTGTGAGACC
GACGGTGAGCTGGCGTGTGAGCGGGCCCGCGTGGCGATCGGCCAGACCCTGCGTGAGACGACCCGCCACAACGCGTTCGT
CGCCCACACCGGTGACGACGAGTACCTGATCGCCGACACGTTCGCCACGACGGATTCGTTCCCGCTGGTCGAACGGGTGC
GGAAGGCGATTGCCGCGACGCCGCCACGGGTGACGGCGAGCATGGGTGTGGTCAGTACACCGATGCGCGGTTTGGGTGCC
TGCCCGCCGACGGAGCTGCTCGACGAGCTGATCACGGTCGCGACGATGGCGATGTACGACGCCCGCCGCGCCGGGGGCAA
CCAGGCCCGTTACGTCTCGTGTGACCGGCCGGCCGTCCTCGACAACGCCCGGCCGCTGGGCACCGACGACCTCTAG

Upstream 100 bases:

>100_bases
GCGCTCCGCGCACCTCCCTGACGCCGATTTTCCGGCCGCCATGTCGGTGCTCGGGCATACAGTTGACGCAGCAGTGGGAG
GTGTCACGATGTTCCAGGCG

Downstream 100 bases:

>100_bases
ACGGTATGGGTGACCGTCGGCGTTGAGTCGGGGGTTGCGGGCCGGGGCCCCACTCACCCATGTTCGTGGGTTACCGAGTA
GGGAGTCGCCTGCCCGGTCT

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 371; Mature: 371

Protein sequence:

>371_residues
MRQYWRQPEHFYWLTSFLAAREAQSATCRLIAMFVATLGAVPLAMQWSDAGPNTTFERGVGAAVTLSCLVIAGFWLRRRW
PSRRQSGVFVAVTAVIIAAGSLIMSDPEAGLLLATGFAVLGAYIALFHTAHYIVGVFALSEFTGVVLAFRLAETAGAVWA
LTALTIVMTVTVAVPFACHLLLYAVDIDVDNADIDPLTGLLNREAFYRAAGHVVSRSRDDDQRLVLVVINLDNMRLLCET
DGELACERARVAIGQTLRETTRHNAFVAHTGDDEYLIADTFATTDSFPLVERVRKAIAATPPRVTASMGVVSTPMRGLGA
CPPTELLDELITVATMAMYDARRAGGNQARYVSCDRPAVLDNARPLGTDDL

Sequences:

>Translated_371_residues
MRQYWRQPEHFYWLTSFLAAREAQSATCRLIAMFVATLGAVPLAMQWSDAGPNTTFERGVGAAVTLSCLVIAGFWLRRRW
PSRRQSGVFVAVTAVIIAAGSLIMSDPEAGLLLATGFAVLGAYIALFHTAHYIVGVFALSEFTGVVLAFRLAETAGAVWA
LTALTIVMTVTVAVPFACHLLLYAVDIDVDNADIDPLTGLLNREAFYRAAGHVVSRSRDDDQRLVLVVINLDNMRLLCET
DGELACERARVAIGQTLRETTRHNAFVAHTGDDEYLIADTFATTDSFPLVERVRKAIAATPPRVTASMGVVSTPMRGLGA
CPPTELLDELITVATMAMYDARRAGGNQARYVSCDRPAVLDNARPLGTDDL
>Mature_371_residues
MRQYWRQPEHFYWLTSFLAAREAQSATCRLIAMFVATLGAVPLAMQWSDAGPNTTFERGVGAAVTLSCLVIAGFWLRRRW
PSRRQSGVFVAVTAVIIAAGSLIMSDPEAGLLLATGFAVLGAYIALFHTAHYIVGVFALSEFTGVVLAFRLAETAGAVWA
LTALTIVMTVTVAVPFACHLLLYAVDIDVDNADIDPLTGLLNREAFYRAAGHVVSRSRDDDQRLVLVVINLDNMRLLCET
DGELACERARVAIGQTLRETTRHNAFVAHTGDDEYLIADTFATTDSFPLVERVRKAIAATPPRVTASMGVVSTPMRGLGA
CPPTELLDELITVATMAMYDARRAGGNQARYVSCDRPAVLDNARPLGTDDL

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40255; Mature: 40255

Theoretical pI: Translated: 5.91; Mature: 5.91

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQYWRQPEHFYWLTSFLAAREAQSATCRLIAMFVATLGAVPLAMQWSDAGPNTTFERGV
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCC
GAAVTLSCLVIAGFWLRRRWPSRRQSGVFVAVTAVIIAAGSLIMSDPEAGLLLATGFAVL
CHHHHHHHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHHHCCCEECCCCCCEEHHHHHHHH
GAYIALFHTAHYIVGVFALSEFTGVVLAFRLAETAGAVWALTALTIVMTVTVAVPFACHL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLYAVDIDVDNADIDPLTGLLNREAFYRAAGHVVSRSRDDDQRLVLVVINLDNMRLLCET
HHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCEEEEEEC
DGELACERARVAIGQTLRETTRHNAFVAHTGDDEYLIADTFATTDSFPLVERVRKAIAAT
CCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHCC
PPRVTASMGVVSTPMRGLGACPPTELLDELITVATMAMYDARRAGGNQARYVSCDRPAVL
CCCHHHHCCCHHCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCC
DNARPLGTDDL
CCCCCCCCCCC
>Mature Secondary Structure
MRQYWRQPEHFYWLTSFLAAREAQSATCRLIAMFVATLGAVPLAMQWSDAGPNTTFERGV
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCC
GAAVTLSCLVIAGFWLRRRWPSRRQSGVFVAVTAVIIAAGSLIMSDPEAGLLLATGFAVL
CHHHHHHHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHHHCCCEECCCCCCEEHHHHHHHH
GAYIALFHTAHYIVGVFALSEFTGVVLAFRLAETAGAVWALTALTIVMTVTVAVPFACHL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLYAVDIDVDNADIDPLTGLLNREAFYRAAGHVVSRSRDDDQRLVLVVINLDNMRLLCET
HHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCEEEEEEC
DGELACERARVAIGQTLRETTRHNAFVAHTGDDEYLIADTFATTDSFPLVERVRKAIAAT
CCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHCC
PPRVTASMGVVSTPMRGLGACPPTELLDELITVATMAMYDARRAGGNQARYVSCDRPAVL
CCCHHHHCCCHHCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCC
DNARPLGTDDL
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA