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The map label for this gene is ycbU [H]

Identifier: 108797678

GI number: 108797678

Start: 751376

End: 752419

Strand: Direct

Name: ycbU [H]

Synonym: Mmcs_0698

Alternate gene names: 108797678

Gene position: 751376-752419 (Clockwise)

Preceding gene: 108797677

Following gene: 108797679

Centisome position: 13.17

GC content: 71.17

Gene sequence:

>1044_bases
ATGACGCCACGTCAGGTGTACGGCGCCGAATTCGCCGGTGCCGCAGGTTTTCTCAACTCTCCGACGTACGGCCTGCCCCC
GGATTTCCTGATGCGGGCGCTGCACGACTGTCTTGCCGCGTGGCAGGCCGGGACGCTCGACGCGAAGTCGTTCGACCAAC
CTGTGCGCGACGCCAGGGCCGCATACGCGGCGCTGGTCGGCGTGCCGTACGCCACCGTGGCGATGGCCGGCAGCACGTCG
GCGGCACTGGGTTTGGTGGCCGCCGCCATACCCGACGGCAGCCGGGGCGCCACGCTGGCCGGTGAATTCACCAGCACCAC
CTTTCCGTTCGCCGCGCAGGCTCGCCGCGGGGTCTCGCTCACCGAACTGTCCGCCGACGAACTCGTTGCCAGGGCCGGCG
ATTACGACTTCGTGACGGTCAGCCTGGTGCAGTCGGCGACGGGCGCGGTGCTCGACGCCGAGGCGCTGCGGACGAACGTG
GCGGGCACCGGGACGCTCACGATCGTCGACGTCACCCAGGCCGCCGGATGGAAGCTGCTGAACCTCGACTGGGCCGACGT
GACGGTGGCATCGGTCTACAAGTGGCTGCTCGCACCGCGCGGCACCGCGTTCCTGTCGGTCAGTGAGCGGACCGCCGACC
TGATGACCCCGCACGCCGCGAACTGGTACGCCGGGAATCAGCCGTGGGAGTCGATCTACGGGCTGCCGCTGCGGCTGGCG
TCCGACGCGCGCCGCTTCGACGTCTCACCGGCCTGGTTCAGCGCGCTGGGTGCGGGCCTGACCCTTCCGTGGCTGGCCGG
CCTCGACAGGGCCGCGGTCGAGGCGCACACCGTGGGCCTGGCCGACACCCTGCGGGCCGAACTGGACCTCCCGCCACATC
CCTCGGCGATCGTGACGCTGCCGTCGGACCGCCACGACGACGCCGCCGAGCGTCTGCAGCGCGCCGGCATCCACGCCTCG
GTGCGGGCGGGGGCCGTCCGCGTCGGATTCCACCTGTACAACACCGCCGACGATCTGAATGGGCTCCTCGACGCCCTGGC
ATGA

Upstream 100 bases:

>100_bases
CCACCGCGAGCATCGCCGCCTTCGACGAGCAGCGGCGCAAGGACCGCGAACAGCTACAGGCCCGACTGCGCGGCGAGGAG
TCGCCCGGCGACCCACAGGC

Downstream 100 bases:

>100_bases
CCGGCGCCGCAGGTGGGTAGCCGATTGATCATGACGACTCACAAGAACCTCTACGAGCAGTGGATCACGCGGCTGTGGGC
CGGAGAACCCGTCGCCGCCG

Product: class V aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 347; Mature: 346

Protein sequence:

>347_residues
MTPRQVYGAEFAGAAGFLNSPTYGLPPDFLMRALHDCLAAWQAGTLDAKSFDQPVRDARAAYAALVGVPYATVAMAGSTS
AALGLVAAAIPDGSRGATLAGEFTSTTFPFAAQARRGVSLTELSADELVARAGDYDFVTVSLVQSATGAVLDAEALRTNV
AGTGTLTIVDVTQAAGWKLLNLDWADVTVASVYKWLLAPRGTAFLSVSERTADLMTPHAANWYAGNQPWESIYGLPLRLA
SDARRFDVSPAWFSALGAGLTLPWLAGLDRAAVEAHTVGLADTLRAELDLPPHPSAIVTLPSDRHDDAAERLQRAGIHAS
VRAGAVRVGFHLYNTADDLNGLLDALA

Sequences:

>Translated_347_residues
MTPRQVYGAEFAGAAGFLNSPTYGLPPDFLMRALHDCLAAWQAGTLDAKSFDQPVRDARAAYAALVGVPYATVAMAGSTS
AALGLVAAAIPDGSRGATLAGEFTSTTFPFAAQARRGVSLTELSADELVARAGDYDFVTVSLVQSATGAVLDAEALRTNV
AGTGTLTIVDVTQAAGWKLLNLDWADVTVASVYKWLLAPRGTAFLSVSERTADLMTPHAANWYAGNQPWESIYGLPLRLA
SDARRFDVSPAWFSALGAGLTLPWLAGLDRAAVEAHTVGLADTLRAELDLPPHPSAIVTLPSDRHDDAAERLQRAGIHAS
VRAGAVRVGFHLYNTADDLNGLLDALA
>Mature_346_residues
TPRQVYGAEFAGAAGFLNSPTYGLPPDFLMRALHDCLAAWQAGTLDAKSFDQPVRDARAAYAALVGVPYATVAMAGSTSA
ALGLVAAAIPDGSRGATLAGEFTSTTFPFAAQARRGVSLTELSADELVARAGDYDFVTVSLVQSATGAVLDAEALRTNVA
GTGTLTIVDVTQAAGWKLLNLDWADVTVASVYKWLLAPRGTAFLSVSERTADLMTPHAANWYAGNQPWESIYGLPLRLAS
DARRFDVSPAWFSALGAGLTLPWLAGLDRAAVEAHTVGLADTLRAELDLPPHPSAIVTLPSDRHDDAAERLQRAGIHASV
RAGAVRVGFHLYNTADDLNGLLDALA

Specific function: Unknown

COG id: COG0520

COG function: function code E; Selenocysteine lyase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000192
- InterPro:   IPR020578
- InterPro:   IPR015424
- InterPro:   IPR015421 [H]

Pfam domain/function: PF00266 Aminotran_5 [H]

EC number: NA

Molecular weight: Translated: 36403; Mature: 36272

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: PS00075 DHFR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPRQVYGAEFAGAAGFLNSPTYGLPPDFLMRALHDCLAAWQAGTLDAKSFDQPVRDARA
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
AYAALVGVPYATVAMAGSTSAALGLVAAAIPDGSRGATLAGEFTSTTFPFAAQARRGVSL
HHHHHHCCCHHHEEECCCCHHHHHHHHHCCCCCCCCCEEECCCCCCCCCHHHHHHCCCCH
TELSADELVARAGDYDFVTVSLVQSATGAVLDAEALRTNVAGTGTLTIVDVTQAAGWKLL
HHCCHHHHHHHCCCCCEEEHHHHHHHCCCEEEHHHHHHCCCCCCEEEEEEECCCCCEEEE
NLDWADVTVASVYKWLLAPRGTAFLSVSERTADLMTPHAANWYAGNQPWESIYGLPLRLA
ECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCCCCHHHHCCCCEEEC
SDARRFDVSPAWFSALGAGLTLPWLAGLDRAAVEAHTVGLADTLRAELDLPPHPSAIVTL
CCCHHCCCCHHHHHHHCCCCCCHHHHCCCHHHHHHHHCCHHHHHHHHCCCCCCCCEEEEC
PSDRHDDAAERLQRAGIHASVRAGAVRVGFHLYNTADDLNGLLDALA
CCCCCHHHHHHHHHCCCCEEHHCCEEEEEEEEECCHHHHHHHHHHHC
>Mature Secondary Structure 
TPRQVYGAEFAGAAGFLNSPTYGLPPDFLMRALHDCLAAWQAGTLDAKSFDQPVRDARA
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
AYAALVGVPYATVAMAGSTSAALGLVAAAIPDGSRGATLAGEFTSTTFPFAAQARRGVSL
HHHHHHCCCHHHEEECCCCHHHHHHHHHCCCCCCCCCEEECCCCCCCCCHHHHHHCCCCH
TELSADELVARAGDYDFVTVSLVQSATGAVLDAEALRTNVAGTGTLTIVDVTQAAGWKLL
HHCCHHHHHHHCCCCCEEEHHHHHHHCCCEEEHHHHHHCCCCCCEEEEEEECCCCCEEEE
NLDWADVTVASVYKWLLAPRGTAFLSVSERTADLMTPHAANWYAGNQPWESIYGLPLRLA
ECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCCCCHHHHCCCCEEEC
SDARRFDVSPAWFSALGAGLTLPWLAGLDRAAVEAHTVGLADTLRAELDLPPHPSAIVTL
CCCHHCCCCHHHHHHHCCCCCCHHHHCCCHHHHHHHHCCHHHHHHHHCCCCCCCCEEEEC
PSDRHDDAAERLQRAGIHASVRAGAVRVGFHLYNTADDLNGLLDALA
CCCCCHHHHHHHHHCCCCEEHHCCEEEEEEEEECCHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274031; 9384377; 7704254; 1353026 [H]