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The map label for this gene is yulB [H]

Identifier: 108797063

GI number: 108797063

Start: 95644

End: 96411

Strand: Reverse

Name: yulB [H]

Synonym: Mmcs_0082

Alternate gene names: 108797063

Gene position: 96411-95644 (Counterclockwise)

Preceding gene: 108797066

Following gene: 108797062

Centisome position: 1.69

GC content: 71.74

Gene sequence:

>768_bases
ATGTACGCCGAAGAACGGCAGCAGGCCATCGCCTCCCTGGTGATGCAGAAGGGCCGCGCTTCGGTGGCGGAGCTGGCCGA
GGCCTATGACGTCACGACCGAGACCGTTCGTCGTGACCTCGCCGCCCTCGACCGGGCGGGCCTGTTGCGCCGGGTCCACG
GCGGTGCGGTGCCGGCCCGGACGCTGCATCTGGTCGAGGCAGGCGTCGGGGAAAGGGAAGCGACGCGGGCGGAGTACAAG
GATGCCATCGCCGCCGCCGCGCTGGAGTACCTGCCCGGCAGCGGCGCCAGCGTGCTCCTCGACGCGGGGACGACCACCGC
GCGGATCGCCGGGCAGCTGCCGTCGGACCGTGAACTCGTCGTCGTCACGAACTCCGTGCCCATCGCCGCACGGCTGGCCG
GCATGCCCTCGGTGAACCTGCAGTTGCTCGGCGGGCGGGTGCGCGGGCTGACCCAGGCCGCCGTCGGCGAGCAGGCCCTG
CGGGTCCTCGACAGCCTGCGCGTCGACGTCGCGTTCATCGGCACCAACGGCATCAGCGTGCGCCACGGCCTGTCCACCCC
CGACAGTGAGGAGGCCGCCGTCAAGCGCGCGATGGTGCGCGCCGCCGGCTACGTGGTGGTGGCGGCCGATTCGTCGAAGG
TCGGCCGCGAGGAGTTCGTCAGCTTCGCGCCGATCAGCAGCGTCGACACCCTGATCACCGACGGCGAGATCAGCGACAAC
TACCGCGGGCAGTTCGCCGAACGCGGCGTCGAGGTCGTGGTCGCATGA

Upstream 100 bases:

>100_bases
GAACCAGGTTACTAAAAAGTGTTGACAAGTCAACACGAACGGGGGTAAAACCAAACATAACCAAGCACCTTCCCGCCACT
TCCCACATAAACGGAGCTCC

Downstream 100 bases:

>100_bases
TCGTCACCGTCACCCCCAACCCCAGCATCGACCGGACGGTCGCGCTGCCGGCCCCGCTGACCCGCGGTGCGGTGCAGCGG
GTCACGTCGGTCACCAGCGA

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MYAEERQQAIASLVMQKGRASVAELAEAYDVTTETVRRDLAALDRAGLLRRVHGGAVPARTLHLVEAGVGEREATRAEYK
DAIAAAALEYLPGSGASVLLDAGTTTARIAGQLPSDRELVVVTNSVPIAARLAGMPSVNLQLLGGRVRGLTQAAVGEQAL
RVLDSLRVDVAFIGTNGISVRHGLSTPDSEEAAVKRAMVRAAGYVVVAADSSKVGREEFVSFAPISSVDTLITDGEISDN
YRGQFAERGVEVVVA

Sequences:

>Translated_255_residues
MYAEERQQAIASLVMQKGRASVAELAEAYDVTTETVRRDLAALDRAGLLRRVHGGAVPARTLHLVEAGVGEREATRAEYK
DAIAAAALEYLPGSGASVLLDAGTTTARIAGQLPSDRELVVVTNSVPIAARLAGMPSVNLQLLGGRVRGLTQAAVGEQAL
RVLDSLRVDVAFIGTNGISVRHGLSTPDSEEAAVKRAMVRAAGYVVVAADSSKVGREEFVSFAPISSVDTLITDGEISDN
YRGQFAERGVEVVVA
>Mature_255_residues
MYAEERQQAIASLVMQKGRASVAELAEAYDVTTETVRRDLAALDRAGLLRRVHGGAVPARTLHLVEAGVGEREATRAEYK
DAIAAAALEYLPGSGASVLLDAGTTTARIAGQLPSDRELVVVTNSVPIAARLAGMPSVNLQLLGGRVRGLTQAAVGEQAL
RVLDSLRVDVAFIGTNGISVRHGLSTPDSEEAAVKRAMVRAAGYVVVAADSSKVGREEFVSFAPISSVDTLITDGEISDN
YRGQFAERGVEVVVA

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789059, Length=255, Percent_Identity=32.5490196078431, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1789829, Length=235, Percent_Identity=33.6170212765957, Blast_Score=126, Evalue=1e-30,
Organism=Escherichia coli, GI1789519, Length=252, Percent_Identity=32.9365079365079, Blast_Score=124, Evalue=6e-30,
Organism=Escherichia coli, GI226510968, Length=257, Percent_Identity=35.408560311284, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI87082344, Length=249, Percent_Identity=28.5140562248996, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1788069, Length=234, Percent_Identity=28.2051282051282, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1787540, Length=233, Percent_Identity=29.6137339055794, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1789170, Length=233, Percent_Identity=28.755364806867, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1790635, Length=254, Percent_Identity=25.5905511811024, Blast_Score=71, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 26767; Mature: 26767

Theoretical pI: Translated: 5.18; Mature: 5.18

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYAEERQQAIASLVMQKGRASVAELAEAYDVTTETVRRDLAALDRAGLLRRVHGGAVPAR
CCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
TLHLVEAGVGEREATRAEYKDAIAAAALEYLPGSGASVLLDAGTTTARIAGQLPSDRELV
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHCCCCCCCCEEE
VVTNSVPIAARLAGMPSVNLQLLGGRVRGLTQAAVGEQALRVLDSLRVDVAFIGTNGISV
EEECCCCHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCEE
RHGLSTPDSEEAAVKRAMVRAAGYVVVAADSSKVGREEFVSFAPISSVDTLITDGEISDN
ECCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHCCCCCHHHEEECCCCCCC
YRGQFAERGVEVVVA
CCCHHHHCCEEEEEC
>Mature Secondary Structure
MYAEERQQAIASLVMQKGRASVAELAEAYDVTTETVRRDLAALDRAGLLRRVHGGAVPAR
CCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
TLHLVEAGVGEREATRAEYKDAIAAAALEYLPGSGASVLLDAGTTTARIAGQLPSDRELV
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHCCCCCCCCEEE
VVTNSVPIAARLAGMPSVNLQLLGGRVRGLTQAAVGEQALRVLDSLRVDVAFIGTNGISV
EEECCCCHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCEE
RHGLSTPDSEEAAVKRAMVRAAGYVVVAADSSKVGREEFVSFAPISSVDTLITDGEISDN
ECCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHCCCCCHHHEEECCCCCCC
YRGQFAERGVEVVVA
CCCHHHHCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274030; 9384377 [H]