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The map label for this gene is ydeS [H]

Identifier: 108797019

GI number: 108797019

Start: 49302

End: 49877

Strand: Reverse

Name: ydeS [H]

Synonym: Mmcs_0038

Alternate gene names: 108797019

Gene position: 49877-49302 (Counterclockwise)

Preceding gene: 108797026

Following gene: 108797018

Centisome position: 0.87

GC content: 70.14

Gene sequence:

>576_bases
ATGCCCGACGGGGTGACTGCTGCGCCACGGCGGCGCAGTGAGAAGTCGCGGGTGGCGATCATCGCCGCCACGCGCGAGCT
GCTGTGGCAGCGGGGCTTCGACGGGCTGAGCATCGAGGCGGTCGCTGCCCGCGCCGGGGTGGGTAAGCAGACGATCTACC
GCTGGTGGCCGAGTCGGCCGGCGCTGGTCGCCGACGTGCTGCTCGAGGATGCGCACGAGATCCTGCTGCCGGTGCGAGAC
TCCGGGAACCTGGTGGCCGACGTGGTGTCGTGGATCGGCAAGTTGGCAGCGACGCTGACCAGCCCGCGAGGCAATGCGAT
GTTGCGGATTCTCACCGTCGCGTCGATGGAGCACGAGGACACCGCTGCGCGGCTGCGGGCGGGTTTCGGTGACCCACTGC
ATGTCTCGGTGCGCGACCGGCTGTTGGCCGCGGGGGTCGATGCGCCGACTGCGGAGTCGGCGGCCGAGGCGATCGTGGGT
GGCGTCGTGTACGCGATTCAGCGCGAGGGCTGTGCGTACTCACGGTCCCGCGCACAGCGGACCGCTCGGTTGGTCGTCGA
GAGCCTGACGAACTGA

Upstream 100 bases:

>100_bases
GGCCCCGATGACGAGCTTCTTCCCCACGGAACTCCTGCTCTTCGAGACGAGACGGTTCGTCTCGTCTGTGGCAGACTACG
GGGCGATGACCCAGCCCGCA

Downstream 100 bases:

>100_bases
CAGAGGCCGGGTCGTGGCGCGACCCGGCCCCTGCGGTTGTTCGTTCGTGGTTACCCGATGCAGCCGACGGCGGGGATACA
GCCCTCGACCCCGTCCGGGC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 190

Protein sequence:

>191_residues
MPDGVTAAPRRRSEKSRVAIIAATRELLWQRGFDGLSIEAVAARAGVGKQTIYRWWPSRPALVADVLLEDAHEILLPVRD
SGNLVADVVSWIGKLAATLTSPRGNAMLRILTVASMEHEDTAARLRAGFGDPLHVSVRDRLLAAGVDAPTAESAAEAIVG
GVVYAIQREGCAYSRSRAQRTARLVVESLTN

Sequences:

>Translated_191_residues
MPDGVTAAPRRRSEKSRVAIIAATRELLWQRGFDGLSIEAVAARAGVGKQTIYRWWPSRPALVADVLLEDAHEILLPVRD
SGNLVADVVSWIGKLAATLTSPRGNAMLRILTVASMEHEDTAARLRAGFGDPLHVSVRDRLLAAGVDAPTAESAAEAIVG
GVVYAIQREGCAYSRSRAQRTARLVVESLTN
>Mature_190_residues
PDGVTAAPRRRSEKSRVAIIAATRELLWQRGFDGLSIEAVAARAGVGKQTIYRWWPSRPALVADVLLEDAHEILLPVRDS
GNLVADVVSWIGKLAATLTSPRGNAMLRILTVASMEHEDTAARLRAGFGDPLHVSVRDRLLAAGVDAPTAESAAEAIVGG
VVYAIQREGCAYSRSRAQRTARLVVESLTN

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 20520; Mature: 20389

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDGVTAAPRRRSEKSRVAIIAATRELLWQRGFDGLSIEAVAARAGVGKQTIYRWWPSRP
CCCCCCCCCCCCCCCCCEEEEHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHEECCCCC
ALVADVLLEDAHEILLPVRDSGNLVADVVSWIGKLAATLTSPRGNAMLRILTVASMEHED
HHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHCCCHH
TAARLRAGFGDPLHVSVRDRLLAAGVDAPTAESAAEAIVGGVVYAIQREGCAYSRSRAQR
HHHHHHHCCCCCEEEHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
TARLVVESLTN
HHHHHHHHHCC
>Mature Secondary Structure 
PDGVTAAPRRRSEKSRVAIIAATRELLWQRGFDGLSIEAVAARAGVGKQTIYRWWPSRP
CCCCCCCCCCCCCCCCEEEEHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHEECCCCC
ALVADVLLEDAHEILLPVRDSGNLVADVVSWIGKLAATLTSPRGNAMLRILTVASMEHED
HHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHCCCHH
TAARLRAGFGDPLHVSVRDRLLAAGVDAPTAESAAEAIVGGVVYAIQREGCAYSRSRAQR
HHHHHHHCCCCCEEEHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
TARLVVESLTN
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]