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The map label for this gene is yfdE [H]

Identifier: 108763802

GI number: 108763802

Start: 3471249

End: 3472427

Strand: Direct

Name: yfdE [H]

Synonym: MXAN_2964

Alternate gene names: 108763802

Gene position: 3471249-3472427 (Clockwise)

Preceding gene: 108760089

Following gene: 108762147

Centisome position: 37.98

GC content: 71.59

Gene sequence:

>1179_bases
ATGCCCATGTCGTCGCTCCCGCTCACAGGCCTGCGCGTGCTGGACTTGTCGCGCCTGCTGCCCGGCCCCTACGCCACCCT
GGTGCTGGCAGACCTGGGCGCCACCGTGGACAAGGTGGAGGAGCCGGAGGGCGGGGACTACATCCGCCAGATGCCGCCCC
TGCGGGATGACGTCAGCGGCCTGTTCTACGGCCTCAATCGGAACAAGCGCTCCCTGACGCTGAACCTGAAGCAGCCCGAA
GGCCGCGAGGCGCTGAAGCGGCTGGTGCGCCACTACGACGTGCTGGTGGAGAGCTTCCGGCCCGGCGTCATGGACAAGCT
GGGCGTGGGCGAGTCCGCGCTGCGCGCGGAGAACCCCCGGCTCATCTACTGCGCCATCTCCGGCTACGGGCAGACGGGGC
CGGATCGGCTGAAGGCGGGGCATGACTTGAACTACGCGGCCCGAGCCGGCCTGCTGGGCTACGGCGGAGAGGCCGGCGGC
GCGCCCGCGTTTCCCGGCGTGCAGATGGGGGACATTGGCGGCGGCAGCCTCTTCGCGCTGGTGGGCATCCTGGCGGCGCT
GCACGAGCGTGAGCGCACGGGGCAGGGGCGCTTCGTGGACGTGTCCATGACGGACGGCGCGCTGGCCTTCCTGCACATGC
ACCTGGCGTCGCGCCTCTACATGGGGACGGAAGGCGTCGCCCTTCAGCGGGGCAAGGAGGCGCTCAACGGTGGCTACGCG
TGCTACGGCCTGTATCGCACGGCGGATGACCGGTGGCTCGCGGTGGGCGCGCTGGAGCCCAAGTTCTTCGCGGGCGTGTG
TGAGCGGCTGGGGCGTCCGGAGCTGCTGGAGGACGCCTACGCCCCGGGTGAGTCCGGCGCGCGCGTGAAGGCGGAGCTGA
CGCGCCTGTTCGCCGAGCACCCTCTGGCGTACTGGCAGGAGCGCTTCGCGGGCTCCGACCTCTGCATCGAGCCCGTGGCG
GAAGGGGACGACGTGCTGAAGGACCCGCAGCTCCAGGCCCGGGGCCTCTTCGTGGAGGCGGAGGACGCGGTGCTGGGCCG
CAAGGTGACGCACCTGCTGACGCCACTGCGCATGGGCGAGACGCCGCTGCGCGCGCCGCCCACGCTGGGGCAGCACTCGC
GGGAGATTCTGGAAGCGGCGGGCTTTACCGCGCAGGAGCTTGCGCGGCTGGGGCACTGA

Upstream 100 bases:

>100_bases
GTGGGCGGACCCCGCCCGCTGGCTTCTGTCGCACGCGGCGCGTCTCCTTCACAGGGGCGCGCCGCAGTCGTTTCCACACC
CCTGATGCTCGCTCCGAGGA

Downstream 100 bases:

>100_bases
CGGCGGGCGTCCGCCACAGGGCCTCGCCGCGCGCGGCGTGGCAGGTGTCGCCCAACAAGTCCAACGCGAGCTGCGGCTGC
CGTTCGGCCAGCGCTGGCCA

Product: putative alpha-methylacyl-CoA racemase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 392; Mature: 391

Protein sequence:

>392_residues
MPMSSLPLTGLRVLDLSRLLPGPYATLVLADLGATVDKVEEPEGGDYIRQMPPLRDDVSGLFYGLNRNKRSLTLNLKQPE
GREALKRLVRHYDVLVESFRPGVMDKLGVGESALRAENPRLIYCAISGYGQTGPDRLKAGHDLNYAARAGLLGYGGEAGG
APAFPGVQMGDIGGGSLFALVGILAALHERERTGQGRFVDVSMTDGALAFLHMHLASRLYMGTEGVALQRGKEALNGGYA
CYGLYRTADDRWLAVGALEPKFFAGVCERLGRPELLEDAYAPGESGARVKAELTRLFAEHPLAYWQERFAGSDLCIEPVA
EGDDVLKDPQLQARGLFVEAEDAVLGRKVTHLLTPLRMGETPLRAPPTLGQHSREILEAAGFTAQELARLGH

Sequences:

>Translated_392_residues
MPMSSLPLTGLRVLDLSRLLPGPYATLVLADLGATVDKVEEPEGGDYIRQMPPLRDDVSGLFYGLNRNKRSLTLNLKQPE
GREALKRLVRHYDVLVESFRPGVMDKLGVGESALRAENPRLIYCAISGYGQTGPDRLKAGHDLNYAARAGLLGYGGEAGG
APAFPGVQMGDIGGGSLFALVGILAALHERERTGQGRFVDVSMTDGALAFLHMHLASRLYMGTEGVALQRGKEALNGGYA
CYGLYRTADDRWLAVGALEPKFFAGVCERLGRPELLEDAYAPGESGARVKAELTRLFAEHPLAYWQERFAGSDLCIEPVA
EGDDVLKDPQLQARGLFVEAEDAVLGRKVTHLLTPLRMGETPLRAPPTLGQHSREILEAAGFTAQELARLGH
>Mature_391_residues
PMSSLPLTGLRVLDLSRLLPGPYATLVLADLGATVDKVEEPEGGDYIRQMPPLRDDVSGLFYGLNRNKRSLTLNLKQPEG
REALKRLVRHYDVLVESFRPGVMDKLGVGESALRAENPRLIYCAISGYGQTGPDRLKAGHDLNYAARAGLLGYGGEAGGA
PAFPGVQMGDIGGGSLFALVGILAALHERERTGQGRFVDVSMTDGALAFLHMHLASRLYMGTEGVALQRGKEALNGGYAC
YGLYRTADDRWLAVGALEPKFFAGVCERLGRPELLEDAYAPGESGARVKAELTRLFAEHPLAYWQERFAGSDLCIEPVAE
GDDVLKDPQLQARGLFVEAEDAVLGRKVTHLLTPLRMGETPLRAPPTLGQHSREILEAAGFTAQELARLGH

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI42794625, Length=390, Percent_Identity=38.2051282051282, Blast_Score=234, Evalue=7e-62,
Organism=Homo sapiens, GI266456254, Length=390, Percent_Identity=38.2051282051282, Blast_Score=234, Evalue=7e-62,
Organism=Homo sapiens, GI300863128, Length=382, Percent_Identity=35.3403141361257, Blast_Score=215, Evalue=5e-56,
Organism=Homo sapiens, GI300863124, Length=408, Percent_Identity=33.578431372549, Blast_Score=201, Evalue=1e-51,
Organism=Homo sapiens, GI266458393, Length=275, Percent_Identity=42.9090909090909, Blast_Score=192, Evalue=5e-49,
Organism=Homo sapiens, GI266458397, Length=261, Percent_Identity=43.6781609195402, Blast_Score=189, Evalue=3e-48,
Organism=Homo sapiens, GI13376042, Length=408, Percent_Identity=30.8823529411765, Blast_Score=165, Evalue=9e-41,
Organism=Homo sapiens, GI300863126, Length=151, Percent_Identity=43.7086092715232, Blast_Score=131, Evalue=1e-30,
Organism=Homo sapiens, GI42822893, Length=145, Percent_Identity=48.9655172413793, Blast_Score=121, Evalue=1e-27,
Organism=Homo sapiens, GI266458395, Length=145, Percent_Identity=48.9655172413793, Blast_Score=121, Evalue=1e-27,
Organism=Escherichia coli, GI87082093, Length=339, Percent_Identity=30.6784660766962, Blast_Score=167, Evalue=1e-42,
Organism=Escherichia coli, GI1788717, Length=421, Percent_Identity=30.8788598574822, Blast_Score=155, Evalue=5e-39,
Organism=Escherichia coli, GI1786222, Length=411, Percent_Identity=27.007299270073, Blast_Score=100, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI32564160, Length=354, Percent_Identity=31.0734463276836, Blast_Score=161, Evalue=6e-40,
Organism=Caenorhabditis elegans, GI115535051, Length=327, Percent_Identity=33.0275229357798, Blast_Score=159, Evalue=3e-39,
Organism=Drosophila melanogaster, GI24585488, Length=345, Percent_Identity=39.4202898550725, Blast_Score=214, Evalue=1e-55,
Organism=Drosophila melanogaster, GI24648431, Length=396, Percent_Identity=34.0909090909091, Blast_Score=188, Evalue=6e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42389; Mature: 42258

Theoretical pI: Translated: 6.07; Mature: 6.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPMSSLPLTGLRVLDLSRLLPGPYATLVLADLGATVDKVEEPEGGDYIRQMPPLRDDVSG
CCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCHHHHCCCCCCCCHHHHCCCCHHHHHH
LFYGLNRNKRSLTLNLKQPEGREALKRLVRHYDVLVESFRPGVMDKLGVGESALRAENPR
HHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHCCCCC
LIYCAISGYGQTGPDRLKAGHDLNYAARAGLLGYGGEAGGAPAFPGVQMGDIGGGSLFAL
EEEEEECCCCCCCHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEECCCCCHHHHHH
VGILAALHERERTGQGRFVDVSMTDGALAFLHMHLASRLYMGTEGVALQRGKEALNGGYA
HHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCHHHHHCHHHHCCCEE
CYGLYRTADDRWLAVGALEPKFFAGVCERLGRPELLEDAYAPGESGARVKAELTRLFAEH
EEEEEEECCCCEEEEECCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHC
PLAYWQERFAGSDLCIEPVAEGDDVLKDPQLQARGLFVEAEDAVLGRKVTHLLTPLRMGE
CHHHHHHHHCCCCCEECCCCCCCCHHCCCCHHHCEEEEECCHHHHHHHHHHHHHHHHCCC
TPLRAPPTLGQHSREILEAAGFTAQELARLGH
CCCCCCCCCCHHHHHHHHHCCCCHHHHHHHCC
>Mature Secondary Structure 
PMSSLPLTGLRVLDLSRLLPGPYATLVLADLGATVDKVEEPEGGDYIRQMPPLRDDVSG
CCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCHHHHCCCCCCCCHHHHCCCCHHHHHH
LFYGLNRNKRSLTLNLKQPEGREALKRLVRHYDVLVESFRPGVMDKLGVGESALRAENPR
HHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHCCCCC
LIYCAISGYGQTGPDRLKAGHDLNYAARAGLLGYGGEAGGAPAFPGVQMGDIGGGSLFAL
EEEEEECCCCCCCHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEECCCCCHHHHHH
VGILAALHERERTGQGRFVDVSMTDGALAFLHMHLASRLYMGTEGVALQRGKEALNGGYA
HHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCHHHHHCHHHHCCCEE
CYGLYRTADDRWLAVGALEPKFFAGVCERLGRPELLEDAYAPGESGARVKAELTRLFAEH
EEEEEEECCCCEEEEECCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHC
PLAYWQERFAGSDLCIEPVAEGDDVLKDPQLQARGLFVEAEDAVLGRKVTHLLTPLRMGE
CHHHHHHHHCCCCCEECCCCCCCCHHCCCCHHHCEEEEECCHHHHHHHHHHHHHHHHCCC
TPLRAPPTLGQHSREILEAAGFTAQELARLGH
CCCCCCCCCCHHHHHHHHHCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]