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The map label for this gene is ytrP [H]

Identifier: 108763499

GI number: 108763499

Start: 3518469

End: 3520406

Strand: Reverse

Name: ytrP [H]

Synonym: MXAN_2997

Alternate gene names: 108763499

Gene position: 3520406-3518469 (Counterclockwise)

Preceding gene: 108758792

Following gene: 108757571

Centisome position: 38.52

GC content: 71.57

Gene sequence:

>1938_bases
ATGCCCCTGGGTCCCGACACTGTTGGTCGCAAGCTGCTGTGGAGCATCGCCCTGCCCGGGCTGCTCGTGGCGCTGCTGGG
CGTCGGCCACTTCTGGCGTGAGGCGCGGGTCGCGGTCCAGGACGCCACCCAGGTGGAGTCGCTGGCGCTGGCGGAGTTCG
TCGCATCCACCTTCACCCTCCCGCAGGCACGCGGGGCTCCGGCCCATGGCGCGGTGACGGAGGTGATGCGCTCCGACACC
CGGCTCTTCCGCTCGGTGGAGGACGTCCGGGTGCTGACGCCGGATGGGCGCATCCTCTGGTCCCGCCGGTCGGGTGAAGA
AGGCACGACGCACCCGGAGGCCGCGCGGCTGACGGCCCCTGGCCCGGAGCGGGCGCGCTCGGTGGCGCAGATGACGGAGG
TCATCCGTCCCCTCGGCGGGCCCGAGTGCGCCGGCTGCCACACCTCCGGCGACGTGCCGGGCGCCAGCATCCTGCAGCTG
CGGATGGCGGAGCCGGCGCTCCACCAGCAGCTGTCGTCCGTGTTCGGCGCGGCGCTCGGCTCCATGGGCCTGTTCGTGGT
GCTGCTGGCGCTCATCACCGGGCTGGCGCTGCACTTCGTCCTCACCCGCCCGCTGCGCAAGCTGAGCGTGGCCATGCGGC
GCGCGGAGGCAGGCGACCTGCTGGTGCGCGCGGAGGCGCGAGGCACCGACGAGCTCGCGCAGCTGGGCTCGGCCTTCAAC
CAGATGCTGGCGCGGCTCACCTCCATGAAGGCGGAGGAGATCGACACCCACCGCGACCTGGAGCTGGTGAAGGAGAAGCT
GGCCCTCAAGGACGAGTTGGAGGACCGCCTCAAGGAGCTGTCGCTGCTCTTCGACGTGGCGCGCTCGCTCAACGCCACGC
TGGAGCTGGATGAGCTGCTGGACGCCGTCACCCGGCTGGTGACCGAGCGGCTGCGCATCCCCGAGTTCTCCATCATGTTG
ATGAACCCGGAGAGCCTGCTGGAAATCAAGCACGCCTGGCCGGAGGGCCGCGGCGCGGAGGGCCTCACCTTCGCGCTGGG
CGAAGGCGCCTGCGGGCGCGCGGCGGAGACGCGCAAGTCGGTGTACCTGCCGGACACGTCGGACCGCTCCAGCGTGTTCG
CCAAGCCGGACCTGGTGAAGGGCGGGCTCAACAGCGGCGCGCTGCTGGCGGCGCCCATGGTGCACATGGAGACGCTGCTG
GGCGTGATGAACTTCCAGCGCCCCGAGGTGGCCAGCTTCTCCGCGGAGGAAATCGAGCTGCTCAACGCGGTGGCGGACGT
GGTGGCCACGGCGGTGAAGAACGCCCGGCTGCACGCGGAGACGGTGAAGCTCACCATGACGGACCCGCTCACCGGCGTGC
CCAACCGCCGCCACCTCTTCCAGCGCATGGAGCTGGAGCTGGCGCGTTCGAACCGCTTCGGCACCCCGCTGGCGCTGCTC
ATGGTGGACGTGGACCACTTCAAGCGCATCAACGACCTGGCCGGCCACCGCGTGGGTGACGAGACGCTGCGCCGGGTGTG
CGACGTGCTGCGGCTGCGCGTGCGCAAGGTGGACACGCTGGCGCGCTACGGCGGCGAGGAGTTCGTCATCCTCCTGCCCC
AGACGAACAAGGCGGAGGCCATGGAGGTCGCGGAGAAGCTGCGCCGCGCCGTGGCGGAGTCCGTGGAGCTGGTCCAGCCG
GGCCTGCCGGGCAACCACGTCACGGTGTCCATTGGCGCGTCGCACTTCCCCTCCGACGCCTCCGCCCAGGAAGAGCTGGT
GGACTGCGCGGACGCGGCGCTCTATTTCAGCAAGCGCACCGGCCGGAACCGCACCACCCAGTACGAGGCCGGCATGGAGC
TGCACCCGGGCCGCGAGCGGGGCCCGCACACGCCCACGGCCGAGCCTCCCGCCGTGACTGCCGCCCCCAATCCTCCGGGT
GGCGTGGCCAAGGCGTAG

Upstream 100 bases:

>100_bases
TTCGTTTGACAGGTAGCGTCAGCCACCTGACAATTCATGGACCGTCCAAACTCCGTGAAACCAGTCCGAACCTCCGCGCT
CGAGAGCCGCGAGCACCCGT

Downstream 100 bases:

>100_bases
GCGCTCAGCGGCTCACGAGCGTCTGCGCCGTGGGCAGCAGCAGGTCCGCCCACTCCTCATAGCCATCGGCCGACGGATGG
AAGCCGTCGTCCGAGAAGAA

Product: HAMP domain/GAF domain/GGDEF domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 645; Mature: 644

Protein sequence:

>645_residues
MPLGPDTVGRKLLWSIALPGLLVALLGVGHFWREARVAVQDATQVESLALAEFVASTFTLPQARGAPAHGAVTEVMRSDT
RLFRSVEDVRVLTPDGRILWSRRSGEEGTTHPEAARLTAPGPERARSVAQMTEVIRPLGGPECAGCHTSGDVPGASILQL
RMAEPALHQQLSSVFGAALGSMGLFVVLLALITGLALHFVLTRPLRKLSVAMRRAEAGDLLVRAEARGTDELAQLGSAFN
QMLARLTSMKAEEIDTHRDLELVKEKLALKDELEDRLKELSLLFDVARSLNATLELDELLDAVTRLVTERLRIPEFSIML
MNPESLLEIKHAWPEGRGAEGLTFALGEGACGRAAETRKSVYLPDTSDRSSVFAKPDLVKGGLNSGALLAAPMVHMETLL
GVMNFQRPEVASFSAEEIELLNAVADVVATAVKNARLHAETVKLTMTDPLTGVPNRRHLFQRMELELARSNRFGTPLALL
MVDVDHFKRINDLAGHRVGDETLRRVCDVLRLRVRKVDTLARYGGEEFVILLPQTNKAEAMEVAEKLRRAVAESVELVQP
GLPGNHVTVSIGASHFPSDASAQEELVDCADAALYFSKRTGRNRTTQYEAGMELHPGRERGPHTPTAEPPAVTAAPNPPG
GVAKA

Sequences:

>Translated_645_residues
MPLGPDTVGRKLLWSIALPGLLVALLGVGHFWREARVAVQDATQVESLALAEFVASTFTLPQARGAPAHGAVTEVMRSDT
RLFRSVEDVRVLTPDGRILWSRRSGEEGTTHPEAARLTAPGPERARSVAQMTEVIRPLGGPECAGCHTSGDVPGASILQL
RMAEPALHQQLSSVFGAALGSMGLFVVLLALITGLALHFVLTRPLRKLSVAMRRAEAGDLLVRAEARGTDELAQLGSAFN
QMLARLTSMKAEEIDTHRDLELVKEKLALKDELEDRLKELSLLFDVARSLNATLELDELLDAVTRLVTERLRIPEFSIML
MNPESLLEIKHAWPEGRGAEGLTFALGEGACGRAAETRKSVYLPDTSDRSSVFAKPDLVKGGLNSGALLAAPMVHMETLL
GVMNFQRPEVASFSAEEIELLNAVADVVATAVKNARLHAETVKLTMTDPLTGVPNRRHLFQRMELELARSNRFGTPLALL
MVDVDHFKRINDLAGHRVGDETLRRVCDVLRLRVRKVDTLARYGGEEFVILLPQTNKAEAMEVAEKLRRAVAESVELVQP
GLPGNHVTVSIGASHFPSDASAQEELVDCADAALYFSKRTGRNRTTQYEAGMELHPGRERGPHTPTAEPPAVTAAPNPPG
GVAKA
>Mature_644_residues
PLGPDTVGRKLLWSIALPGLLVALLGVGHFWREARVAVQDATQVESLALAEFVASTFTLPQARGAPAHGAVTEVMRSDTR
LFRSVEDVRVLTPDGRILWSRRSGEEGTTHPEAARLTAPGPERARSVAQMTEVIRPLGGPECAGCHTSGDVPGASILQLR
MAEPALHQQLSSVFGAALGSMGLFVVLLALITGLALHFVLTRPLRKLSVAMRRAEAGDLLVRAEARGTDELAQLGSAFNQ
MLARLTSMKAEEIDTHRDLELVKEKLALKDELEDRLKELSLLFDVARSLNATLELDELLDAVTRLVTERLRIPEFSIMLM
NPESLLEIKHAWPEGRGAEGLTFALGEGACGRAAETRKSVYLPDTSDRSSVFAKPDLVKGGLNSGALLAAPMVHMETLLG
VMNFQRPEVASFSAEEIELLNAVADVVATAVKNARLHAETVKLTMTDPLTGVPNRRHLFQRMELELARSNRFGTPLALLM
VDVDHFKRINDLAGHRVGDETLRRVCDVLRLRVRKVDTLARYGGEEFVILLPQTNKAEAMEVAEKLRRAVAESVELVQPG
LPGNHVTVSIGASHFPSDASAQEELVDCADAALYFSKRTGRNRTTQYEAGMELHPGRERGPHTPTAEPPAVTAAPNPPGG
VAKA

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI145693134, Length=165, Percent_Identity=41.8181818181818, Blast_Score=125, Evalue=1e-29,
Organism=Escherichia coli, GI1787262, Length=163, Percent_Identity=37.4233128834356, Blast_Score=108, Evalue=1e-24,
Organism=Escherichia coli, GI87081881, Length=178, Percent_Identity=38.2022471910112, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1786584, Length=176, Percent_Identity=32.9545454545455, Blast_Score=100, Evalue=5e-22,
Organism=Escherichia coli, GI1788085, Length=168, Percent_Identity=34.5238095238095, Blast_Score=89, Evalue=1e-18,
Organism=Escherichia coli, GI87082007, Length=158, Percent_Identity=34.8101265822785, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI1788381, Length=162, Percent_Identity=34.5679012345679, Blast_Score=87, Evalue=5e-18,
Organism=Escherichia coli, GI1787816, Length=200, Percent_Identity=33.5, Blast_Score=86, Evalue=6e-18,
Organism=Escherichia coli, GI1787802, Length=173, Percent_Identity=33.5260115606936, Blast_Score=83, Evalue=6e-17,
Organism=Escherichia coli, GI87081977, Length=275, Percent_Identity=22.5454545454545, Blast_Score=71, Evalue=3e-13,
Organism=Escherichia coli, GI1787541, Length=165, Percent_Identity=30.9090909090909, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI87081974, Length=170, Percent_Identity=24.7058823529412, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI87081921, Length=207, Percent_Identity=25.1207729468599, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR003018 [H]

Pfam domain/function: PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 69989; Mature: 69858

Theoretical pI: Translated: 6.47; Mature: 6.47

Prosite motif: PS50885 HAMP ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLGPDTVGRKLLWSIALPGLLVALLGVGHFWREARVAVQDATQVESLALAEFVASTFTL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PQARGAPAHGAVTEVMRSDTRLFRSVEDVRVLTPDGRILWSRRSGEEGTTHPEAARLTAP
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCEEECCCCCEEEECCCCCCCCCCCCCCEECCC
GPERARSVAQMTEVIRPLGGPECAGCHTSGDVPGASILQLRMAEPALHQQLSSVFGAALG
CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHH
SMGLFVVLLALITGLALHFVLTRPLRKLSVAMRRAEAGDLLVRAEARGTDELAQLGSAFN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH
QMLARLTSMKAEEIDTHRDLELVKEKLALKDELEDRLKELSLLFDVARSLNATLELDELL
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
DAVTRLVTERLRIPEFSIMLMNPESLLEIKHAWPEGRGAEGLTFALGEGACGRAAETRKS
HHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCHHHCCCC
VYLPDTSDRSSVFAKPDLVKGGLNSGALLAAPMVHMETLLGVMNFQRPEVASFSAEEIEL
EECCCCCCCCCEECCCCHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
LNAVADVVATAVKNARLHAETVKLTMTDPLTGVPNRRHLFQRMELELARSNRFGTPLALL
HHHHHHHHHHHHHHCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHH
MVDVDHFKRINDLAGHRVGDETLRRVCDVLRLRVRKVDTLARYGGEEFVILLPQTNKAEA
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHH
MEVAEKLRRAVAESVELVQPGLPGNHVTVSIGASHFPSDASAQEELVDCADAALYFSKRT
HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHC
GRNRTTQYEAGMELHPGRERGPHTPTAEPPAVTAAPNPPGGVAKA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
>Mature Secondary Structure 
PLGPDTVGRKLLWSIALPGLLVALLGVGHFWREARVAVQDATQVESLALAEFVASTFTL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PQARGAPAHGAVTEVMRSDTRLFRSVEDVRVLTPDGRILWSRRSGEEGTTHPEAARLTAP
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCEEECCCCCEEEECCCCCCCCCCCCCCEECCC
GPERARSVAQMTEVIRPLGGPECAGCHTSGDVPGASILQLRMAEPALHQQLSSVFGAALG
CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHH
SMGLFVVLLALITGLALHFVLTRPLRKLSVAMRRAEAGDLLVRAEARGTDELAQLGSAFN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH
QMLARLTSMKAEEIDTHRDLELVKEKLALKDELEDRLKELSLLFDVARSLNATLELDELL
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
DAVTRLVTERLRIPEFSIMLMNPESLLEIKHAWPEGRGAEGLTFALGEGACGRAAETRKS
HHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCHHHCCCC
VYLPDTSDRSSVFAKPDLVKGGLNSGALLAAPMVHMETLLGVMNFQRPEVASFSAEEIEL
EECCCCCCCCCEECCCCHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
LNAVADVVATAVKNARLHAETVKLTMTDPLTGVPNRRHLFQRMELELARSNRFGTPLALL
HHHHHHHHHHHHHHCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHH
MVDVDHFKRINDLAGHRVGDETLRRVCDVLRLRVRKVDTLARYGGEEFVILLPQTNKAEA
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHH
MEVAEKLRRAVAESVELVQPGLPGNHVTVSIGASHFPSDASAQEELVDCADAALYFSKRT
HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHC
GRNRTTQYEAGMELHPGRERGPHTPTAEPPAVTAAPNPPGGVAKA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1699930; 9387221; 9384377 [H]