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The map label for this gene is sigK [H]

Identifier: 108763473

GI number: 108763473

Start: 4399967

End: 4400566

Strand: Direct

Name: sigK [H]

Synonym: MXAN_3686

Alternate gene names: 108763473

Gene position: 4399967-4400566 (Clockwise)

Preceding gene: 108760857

Following gene: 108761075

Centisome position: 48.14

GC content: 70.5

Gene sequence:

>600_bases
ATGGCGCCTCCTTCCTCCGCTGTGCCCCGAGCAAGCGACCCAGCGCTGGACCTGGCCCTCCTCCGGCAGGTCGCCATGGG
AAGCCCGCAGGCCATGCGCGACGTCTATGCGCGCTGCGGCGGACGGTGTTTCGCCATCGCGTTGCGGTTGCTACCAACAC
ACGCTGACGCGGAAGAGGTGTTGCAGGAGACCTTCCTGGAGGTCTGGCGGCGCGCCCGAGAGTTCAATCCAGAACGCGGC
GGTCTGGAGGCATGGGTGGCGACGATTGTGCGCACGCGCGCCATCGACCGGCTGCGGGCGCAGGGAACCGCGGCCCGGGT
GGTGGAAGGGGCCGTGCAGCAGGAGCCTCCGGTCAGCGCCGCGCCCGCCGCGCCGGACGAAGCGGTCAGCCAGGAGGAGG
CTCGTGCTCGCGTGGTGGCGGCGCTGGCCCAGCTTCCTCCGGAGCAGCGGGCGGTGGTGGAGCTTGCCTACTTCGAAGGC
CTCTCCCAGCGGGAGATTTCCGAGCGCACCGGAGACCCATTGGGCACGGTGAAGACCCGTGCGCGGCTCGCGTTGGAGAA
GCTGGGGGCGTTGTTGGAGATGCTGCGCCCCCACGCCTAG

Upstream 100 bases:

>100_bases
CGGGCACTGCCCACCCTGGAAGGCACAGCGCGCCCGGGTGCCCGCCTGCCGATACTTGAAGCTGGGAACTGCCCTGCCGA
TTGAGCTATCCGGGACGAAC

Downstream 100 bases:

>100_bases
CCCCAATGCCGGTCAGTCAGGAACGGCCCTTCTTGCGCTCCGTCTTCGCCTTCGGGACCTCACCGTAGCCGGACACCACG
AGCCCGAGCGTCTGGACGAA

Product: ECF subfamily RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-K factor [H]

Number of amino acids: Translated: 199; Mature: 198

Protein sequence:

>199_residues
MAPPSSAVPRASDPALDLALLRQVAMGSPQAMRDVYARCGGRCFAIALRLLPTHADAEEVLQETFLEVWRRAREFNPERG
GLEAWVATIVRTRAIDRLRAQGTAARVVEGAVQQEPPVSAAPAAPDEAVSQEEARARVVAALAQLPPEQRAVVELAYFEG
LSQREISERTGDPLGTVKTRARLALEKLGALLEMLRPHA

Sequences:

>Translated_199_residues
MAPPSSAVPRASDPALDLALLRQVAMGSPQAMRDVYARCGGRCFAIALRLLPTHADAEEVLQETFLEVWRRAREFNPERG
GLEAWVATIVRTRAIDRLRAQGTAARVVEGAVQQEPPVSAAPAAPDEAVSQEEARARVVAALAQLPPEQRAVVELAYFEG
LSQREISERTGDPLGTVKTRARLALEKLGALLEMLRPHA
>Mature_198_residues
APPSSAVPRASDPALDLALLRQVAMGSPQAMRDVYARCGGRCFAIALRLLPTHADAEEVLQETFLEVWRRAREFNPERGG
LEAWVATIVRTRAIDRLRAQGTAARVVEGAVQQEPPVSAAPAAPDEAVSQEEARARVVAALAQLPPEQRAVVELAYFEGL
SQREISERTGDPLGTVKTRARLALEKLGALLEMLRPHA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 21590; Mature: 21459

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPPSSAVPRASDPALDLALLRQVAMGSPQAMRDVYARCGGRCFAIALRLLPTHADAEEV
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHH
LQETFLEVWRRAREFNPERGGLEAWVATIVRTRAIDRLRAQGTAARVVEGAVQQEPPVSA
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCC
APAAPDEAVSQEEARARVVAALAQLPPEQRAVVELAYFEGLSQREISERTGDPLGTVKTR
CCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHH
ARLALEKLGALLEMLRPHA
HHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
APPSSAVPRASDPALDLALLRQVAMGSPQAMRDVYARCGGRCFAIALRLLPTHADAEEV
CCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHH
LQETFLEVWRRAREFNPERGGLEAWVATIVRTRAIDRLRAQGTAARVVEGAVQQEPPVSA
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCC
APAAPDEAVSQEEARARVVAALAQLPPEQRAVVELAYFEGLSQREISERTGDPLGTVKTR
CCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHH
ARLALEKLGALLEMLRPHA
HHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]